PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10013401m | ||||||||
Common Name | CARUB_v10013401mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | C2H2 | ||||||||
Protein Properties | Length: 544aa MW: 60673.5 Da PI: 8.502 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.5 | 2.3e-05 | 140 | 162 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Carubv10013401m 140 FVCEICSKGFQRDQNLQLHRRGH 162 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.6E-5 | 139 | 162 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.79E-6 | 139 | 162 | No hit | No description |
PROSITE profile | PS50157 | 10.887 | 140 | 162 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.036 | 140 | 162 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 142 | 162 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 182 | 212 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 5.79E-6 | 212 | 237 | No hit | No description |
SMART | SM00355 | 180 | 217 | 237 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 544 aa Download sequence Send to blast |
LGFKYRERER EEEDNRVSLV HHNLFLSPSL LLGFLFCLFR LVMMNKDMLL HQHHHQPQQD 60 ENMSNLTSAS GDQASVSSGN ITEASGSNYF PHHQQQQQQE QFCLPDSQPQ KKRRNQPGNP 120 DPESEVIALS PKTLMATNRF VCEICSKGFQ RDQNLQLHRR GHNLPWKLKQ RSNKEVIRKK 180 VYVCPEATCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DCKAHSKTCG 240 TKEYRCDCGT LFSRRDSFIT HRAFCEALAE ETAREVVLPQ NQNNQQNPLL IHQSSSYPHQ 300 HQTQPNVNVS SSSSSSHNII NSLHFEHANN GTSHGNSSSN HLHTFSMKKE QQNNDHNISY 360 HHSIPPWLAP HPRDLTSSNP NPSNGGGGGL FSLASPAMSA TALLQKAAQM GSTKTPPLPP 420 TTGFERSTHN KNLTTTMAPM MTSPSAFNNN NSQVMFQDYN ASGFDNQGGE EAFDEAFGGF 480 LRTNEATATR SDKSKSGGGE GLTRDFLGLR PLMSHNEILS FAGLGNCINT SASEQLHPKP 540 WQG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-32 | 213 | 281 | 3 | 71 | Zinc finger protein JACKDAW |
5b3h_F | 2e-32 | 213 | 281 | 3 | 71 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 166 | 179 | KLKQRSNKEVIRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00355 | DAP | Transfer from AT3G13810 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10013401m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF361797 | 0.0 | AF361797.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006296703.2 | 0.0 | protein indeterminate-domain 11 isoform X1 | ||||
Refseq | XP_023642312.1 | 0.0 | protein indeterminate-domain 11 isoform X1 | ||||
Refseq | XP_023642313.1 | 0.0 | protein indeterminate-domain 11 isoform X1 | ||||
Refseq | XP_023642314.1 | 0.0 | protein indeterminate-domain 11 isoform X2 | ||||
Swissprot | Q9LRW7 | 0.0 | IDD11_ARATH; Protein indeterminate-domain 11 | ||||
TrEMBL | R0G2R1 | 0.0 | R0G2R1_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_006296703.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM155 | 28 | 306 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13810.1 | 0.0 | indeterminate(ID)-domain 11 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10013401m |
Entrez Gene | 17891851 |
Publications ? help Back to Top | |||
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