PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10013017m
Common NameCARUB_v10013017mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family FAR1
Protein Properties Length: 785aa    MW: 90107.4 Da    PI: 7.1586
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10013017mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.17.8e-2063137189
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                      ++Yn++A+++GF+vr+ + ++s+++g++ +r+fvCskeg++ +              +rtgC a ++v+++++gkw+++++++eHnHel
  Carubv10013017m  63 DYYNSFATRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCPAFIRVQRRDTGKWVLDQIQKEHNHEL 137
                      69**************************************876..............589***************************98 PP
2FAR168.41.8e-21224300191
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                      +fY++YA+ vGF+vr+ +  +sk +g+it+r+fvCskeg+++++              r+gC a +++k++++g w v++l+++HnHel p
  Carubv10013017m 224 QFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSKEGFQHPS--------------RMGCGAYMRIKRQDSGGWIVDRLNKDHNHELEP 300
                      6***************************************9994..............799***************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1563137IPR004330FAR1 DNA binding domain
PfamPF031017.3E-17224300IPR004330FAR1 DNA binding domain
PfamPF105511.8E-25396488IPR018289MULE transposase domain
PROSITE profilePS5096610.373670706IPR007527Zinc finger, SWIM-type
PfamPF044341.5E-8677703IPR007527Zinc finger, SWIM-type
SMARTSM005751.3E-8681708IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 785 aa     Download sequence    Send to blast
MDMESADTEP TSLNCGNNNM VVKAYPLGMV RIMNNNGIGE DEGDSVVEPY VGLEFDTAEE  60
ARDYYNSFAT RTGFKVRTGQ LYRSRTDGTV SSRRFVCSKE GFQLNSRTGC PAFIRVQRRD  120
TGKWVLDQIQ KEHNHELGGH VEETTPRPSV QQRAPAPTKL GISVPHRPKM KVVDEADKGR  180
SCPSGVISFK RFKGAEESDE QTQPKATTEP YAGLEFGSAN EACQFYQAYA EVVGFRVRIG  240
QLFRSKVDGS ITSRRFVCSK EGFQHPSRMG CGAYMRIKRQ DSGGWIVDRL NKDHNHELEP  300
GKKNAGMKKI TEDVTGGLDS VDLIELNDFN NHISTTRENT IGKEWYPVLF DYFQSKQAED  360
MGFFYAVELD SNGSCMSIFW ADSRSRFACS QFGDAVVFDT SYRNGEYSVP FATFIGFNHH  420
RQPVLLGGAL VADESKEAFS WLFQTWLRAM SGRRPRSIIA DQDLPIQQAV AQVFPGAHHR  480
FSAWQIRSKE QENLRSFPNE FKYEYEKCLY QSQTTVEFDT MWSALVNKYG LRDNMWLREI  540
YEKRENWVPA YLRASFFGGI PVNGTFEPFY GTSLNSLISL REFISRYEQG LEQRREEERK  600
EDFNSYNLQP FLQTKEPVEE QCRRLYTLTI FRIFQSELAQ SYNYLGLKTY EEGAISRFLV  660
RKCGNENEKH AVTFSASNLN ASCSCQMFEY EGLLCRHILK VFNLLDIREL PSRYILHRWT  720
KNAEFGFVRD VESGVTSQDL KALMIWSLRE AASKYIEFGT SSLEKYKLAY EIMREGGKKL  780
CWQR*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10013017m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATAC0189070.0AC018907.5 Arabidopsis thaliana chromosome III BAC F28L1 genomic sequence, complete sequence.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297026.10.0protein FAR1-RELATED SEQUENCE 7 isoform X1
RefseqXP_023641342.10.0protein FAR1-RELATED SEQUENCE 7 isoform X1
RefseqXP_023641343.10.0protein FAR1-RELATED SEQUENCE 7 isoform X1
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLR0HJN80.0R0HJN8_9BRAS; Uncharacterized protein
STRINGXP_006297026.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57302239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]