PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10012513m | ||||||||
Common Name | CARUB_v10012513mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ERF | ||||||||
Protein Properties | Length: 329aa MW: 37109.4 Da PI: 4.5132 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.2 | 3.1e-16 | 92 | 133 | 1 | 46 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaa 46 sg+kGVr+++ +g+++AeIrdp e +kr +lg+f t+eeAa+a+ Carubv10012513m 92 SGFKGVRRRP-WGKYAAEIRDPFE---KKRKWLGTFPTEEEAAEAY 133 79********.**********644...5*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.51E-21 | 92 | 135 | No hit | No description |
Pfam | PF00847 | 2.5E-9 | 92 | 133 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-15 | 92 | 137 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.4E-15 | 93 | 153 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.953 | 93 | 150 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-8 | 94 | 105 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-19 | 94 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-8 | 116 | 132 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MIRSRDEVDD IVDLNVIRTV NVICNDPYAT DSSSDDDDEV VISGKNTRRR HIKPKPRKRF 60 VSRICVPTLI KRYENLSSST GNKAAGNRKT SSGFKGVRRR PWGKYAAEIR DPFEKKRKWL 120 GTFPTEEEAA EAYQRSKSVF DERMGLVKAE VDVVDLTKPC GVRKPEECSV RKKVHKKNVV 180 DNTFVCGGYV DEDEGLSIDK LLEDPLMTPS ISDIFRDSAV GSDDIWVDCN PAEFNSIFDD 240 FKLDSLEVDD KIGNEKTLGF KIGDTPAEIA STIANIFDDA DLREFEQLAD EFRLGDSPTD 300 DFWVLGEPDV GDDYNWLNST IDWIDKSL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 97 | 117 | RRRPWGKYAAEIRDPFEKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10012513m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC254578 | 0.0 | AC254578.1 Capsella rubella clone JGIBSIA-13A21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023632864.1 | 0.0 | ethylene-responsive transcription factor ERF117 | ||||
Swissprot | Q9M9B2 | 1e-127 | EF117_ARATH; Ethylene-responsive transcription factor ERF117 | ||||
TrEMBL | R0GU04 | 0.0 | R0GU04_9BRAS; Uncharacterized protein | ||||
STRING | XP_006306514.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16547 | 10 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49120.1 | 1e-120 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10012513m |
Entrez Gene | 17896944 |