PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10010985m
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 539aa    MW: 57133.1 Da    PI: 8.8017
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10010985mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.8e-09157201144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHH..HHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar..tmgkgRtlkqcksrw 44 
                      r++W++eEde l  avk+ G g+W+ I +       Rt+ q+  rw
  Carubv10010985m 157 RKKWSAEEDEELFAAVKRCGEGNWAHIVKgdFR-GERTASQLSQRW 201
                      789***********************9652134.478888887777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.875152209IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-12154206IPR009057Homeodomain-like
SuperFamilySSF466896.75E-12154207IPR009057Homeodomain-like
SMARTSM007172.4E-9156207IPR001005SANT/Myb domain
PfamPF002491.4E-6157201IPR001005SANT/Myb domain
CDDcd116601.99E-14158206No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MAYYSEFKMD WNELVKKTTT GITNAREYQL LWRHLSYREP LLPVEDDAQP LDDDSDMECE  60
LEASPAVSHE ASVEAIAHVK VMATSYVPSE SDILDDSTVE APLTINIPYV LPEGTKEPSE  120
SPWSSRGMNI TFPKSTSTER VNGNNSACSS MACRRKRKKW SAEEDEELFA AVKRCGEGNW  180
AHIVKGDFRG ERTASQLSQR WALIRKRCHT STMISSCGIT ETQVIGASSS QVVLALPRAA  240
TSVPASKSRV VKKTTAHSIS RLDLMVTANS VAVAACTGGV SAAASVPKVE PKKTYAPLVP  300
KTEPVKIAST ACMPQPSGSL SVPKVEPGTN VTSSSIIKAV GPTNALPLAI GELKPVTTLS  360
SSNKCPLMAP PGSAMLSASA PCASESSIVY NQRVFAASVP AIVLQLKPAA EIVTCKLDGG  420
QKEQARVNGA SSSAAIQPNQ MTSPNSEISR EKQATQVQSH NLLPRKIPVV QTAVHGDTNK  480
NLVDKPSDKT VIPSVRGAGS QSKAKCEINN KVGQAIKVSG VCGQSPKVAT VAGTRQGV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154158RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10010985m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545830.0AC254583.1 Capsella rubella clone JGIBSIA-25G5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023644575.10.0LOW QUALITY PROTEIN: uncharacterized protein LOC17898831
TrEMBLD7KJT30.0D7KJT3_ARALL; DNA binding protein
STRINGCagra.4395s0155.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.10.0MYB_related family protein