PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10006264m

Common Name

CARUB_v10006264mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 198aa MW: 22149.4 Da PI: 8.3145

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10006264m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.1	2.4e-11	3	54	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ h+e+E++RR ++ s ++ Lr+llP + ++K s ++ L v+YI +L+ Carubv10006264m 3 KVVHKEVEKQRRLEMASLYASLRSLLPLEF--IQGKRSTSDQLNGGVNYIEYLE 54 578***********************65..******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.801	1	53	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-8	3	54	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.5E-10	3	67	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.10E-6	3	58	No hit	No description
SuperFamily	SSF47459	5.37E-11	3	68	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MEKVVHKEVE KQRRLEMASL YASLRSLLPL EFIQGKRSTS DQLNGGVNYI EYLERNIKDM 60 SSKRDGLVLL SRRSFGSSNE QGCDDDSNHV VIRPCLVGVE IVFSHLQTPI SSVLQVLRER 120 GLCVIGCISS SVNDRLIHTL QAEVKDLALI DLADLKNKSY LKYVIIAPVS TYVASQLRTK 180 DSTYVELNKN SVTHPDK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10006264m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023635067.1	1e-109	transcription factor bHLH118
Swissprot	Q9STJ7	4e-85	BH118_ARATH; Transcription factor bHLH118
TrEMBL	R0GLV3	1e-141	R0GLV3_9BRAS; Uncharacterized protein
STRING	XP_006284961.1	1e-141	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4479	27	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25400.1	2e-79	bHLH family protein

Link Out ? help Back to Top
Phytozome	Carubv10006264m
Entrez Gene	17878824