PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10005349m | ||||||||
Common Name | CARUB_v10005349mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | WRKY | ||||||||
Protein Properties | Length: 303aa MW: 33898.8 Da PI: 7.8469 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.9 | 5.7e-30 | 168 | 226 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rsaedp++++ tYeg+Hnh Carubv10005349m 168 VKDGYQWRKYGQKVTRDNPSPRAYFRCSFApSCPVKKKVQRSAEDPSLLVATYEGTHNH 226 58***************************99**************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.9E-29 | 159 | 227 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.92E-25 | 164 | 227 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.1E-34 | 168 | 228 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-24 | 169 | 226 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.935 | 170 | 229 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050691 | Biological Process | regulation of defense response to virus by host | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MDCSSFLDLN TNPFPEMLPK KEASVSASTH FKRKWLEQDE SASELREELN RVNSENKKLN 60 EMLATVHENY CALRHQLEKL QSRQSPEISQ TEQPIKKRKQ DPDEFLGFPI GLSSGKTENS 120 SSNDDQQQQY EQKNQLISCK RPVTDSFNKA KVSTVYVPTD TSDTSLTVKD GYQWRKYGQK 180 VTRDNPSPRA YFRCSFAPSC PVKKKVQRSA EDPSLLVATY EGTHNHLGPN ASECDATSQG 240 GSSTVTLDLV HGSHRLALEK NERNTMQDVL VQQMASSLTK DSKFTAALAA AISGRLMEQS 300 RT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-20 | 161 | 226 | 11 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 4e-20 | 161 | 226 | 11 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Positively modulates defense-related gene expression and disease resistance. {ECO:0000269|PubMed:12068113}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00465 | DAP | Transfer from AT4G31800 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10005349m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and pathogens. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:12068113}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF428421 | 0.0 | AF428421.1 Arabidopsis thaliana AT4g31800/F28M20_10 mRNA, complete cds. | |||
GenBank | AK227401 | 0.0 | AK227401.1 Arabidopsis thaliana mRNA for WRKY like transcription factor, complete cds, clone: RAFL14-06-B12. | |||
GenBank | AY125557 | 0.0 | AY125557.1 Arabidopsis thaliana AT4g31800/F28M20_10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006284195.1 | 0.0 | WRKY transcription factor 18 | ||||
Swissprot | Q9C5T4 | 0.0 | WRK18_ARATH; WRKY transcription factor 18 | ||||
TrEMBL | R0H0X1 | 0.0 | R0H0X1_9BRAS; Uncharacterized protein | ||||
STRING | XP_006284195.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6584 | 19 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31800.1 | 0.0 | WRKY DNA-binding protein 18 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10005349m |
Entrez Gene | 17879262 |