PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10003671m
Common NameCARUB_v10003671mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 145aa    MW: 17129.1 Da    PI: 10.9548
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10003671mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM76.85.2e-2491233128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      pG rF P+   l+++yL+++ +g++ ++   i e+diyk ePw L+  ++++++++ w++F++r kk+     k+ra+ +g+Wk++g+ k++++
  Carubv10003671m   9 PGSRFVPSVLVLLDRYLRRRKAGESSRF---IYEMDIYKKEPWLLQhvRHFRSKKNMWFYFVTRTKKN-----KSRAAGAGTWKTSGSVKNIYK 94 
                      9*********************999665...**************953377778889*****998874.....78999***************9 PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +g ++g+ + + f      ++ kt Wvmhey l
  Carubv10003671m  95 -DGVKIGTTQLISFK----INTLKTGWVMHEYIL 123
                      .99***********7....56789********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.5817144IPR003441NAC domain
SuperFamilySSF1019415.1E-297144IPR003441NAC domain
PfamPF023653.4E-159122IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MVTPRSHIPG SRFVPSVLVL LDRYLRRRKA GESSRFIYEM DIYKKEPWLL QHVRHFRSKK  60
NMWFYFVTRT KKNKSRAAGA GTWKTSGSVK NIYKDGVKIG TTQLISFKIN TLKTGWVMHE  120
YILDDQRFIQ DSDQQVVLCI LKFKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-18212315145NAC domain-containing protein 19
3swm_B7e-18212315145NAC domain-containing protein 19
3swm_C7e-18212315145NAC domain-containing protein 19
3swm_D7e-18212315145NAC domain-containing protein 19
3swp_A7e-18212315145NAC domain-containing protein 19
3swp_B7e-18212315145NAC domain-containing protein 19
3swp_C7e-18212315145NAC domain-containing protein 19
3swp_D7e-18212315145NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12127DRYLRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10003671m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290037.21e-104NAC domain-containing protein 74
TrEMBLR0HD231e-104R0HD23_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006290037.11e-104(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144241018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52890.11e-15NAC domain containing protein 19