PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10003671m | ||||||||
Common Name | CARUB_v10003671mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NAC | ||||||||
Protein Properties | Length: 145aa MW: 17129.1 Da PI: 10.9548 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 76.8 | 5.2e-24 | 9 | 123 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 pG rF P+ l+++yL+++ +g++ ++ i e+diyk ePw L+ ++++++++ w++F++r kk+ k+ra+ +g+Wk++g+ k++++ Carubv10003671m 9 PGSRFVPSVLVLLDRYLRRRKAGESSRF---IYEMDIYKKEPWLLQhvRHFRSKKNMWFYFVTRTKKN-----KSRAAGAGTWKTSGSVKNIYK 94 9*********************999665...**************953377778889*****998874.....78999***************9 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +g ++g+ + + f ++ kt Wvmhey l Carubv10003671m 95 -DGVKIGTTQLISFK----INTLKTGWVMHEYIL 123 .99***********7....56789********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 28.581 | 7 | 144 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.1E-29 | 7 | 144 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-15 | 9 | 122 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MVTPRSHIPG SRFVPSVLVL LDRYLRRRKA GESSRFIYEM DIYKKEPWLL QHVRHFRSKK 60 NMWFYFVTRT KKNKSRAAGA GTWKTSGSVK NIYKDGVKIG TTQLISFKIN TLKTGWVMHE 120 YILDDQRFIQ DSDQQVVLCI LKFKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 7e-18 | 2 | 123 | 15 | 145 | NAC domain-containing protein 19 |
3swm_B | 7e-18 | 2 | 123 | 15 | 145 | NAC domain-containing protein 19 |
3swm_C | 7e-18 | 2 | 123 | 15 | 145 | NAC domain-containing protein 19 |
3swm_D | 7e-18 | 2 | 123 | 15 | 145 | NAC domain-containing protein 19 |
3swp_A | 7e-18 | 2 | 123 | 15 | 145 | NAC domain-containing protein 19 |
3swp_B | 7e-18 | 2 | 123 | 15 | 145 | NAC domain-containing protein 19 |
3swp_C | 7e-18 | 2 | 123 | 15 | 145 | NAC domain-containing protein 19 |
3swp_D | 7e-18 | 2 | 123 | 15 | 145 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 21 | 27 | DRYLRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10003671m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006290037.2 | 1e-104 | NAC domain-containing protein 74 | ||||
TrEMBL | R0HD23 | 1e-104 | R0HD23_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_006290037.1 | 1e-104 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14424 | 10 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52890.1 | 1e-15 | NAC domain containing protein 19 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10003671m |
Entrez Gene | 17884517 |