PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.9228s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 326aa    MW: 36332.1 Da    PI: 4.8301
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.9228s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.22e-102502901055
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Cagra.9228s0001.1.p 250 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 290
                          9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148240289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-14241306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-12245299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11246295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.18E-11249294No hitNo description
PfamPF000109.8E-8250290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEAMGEWSTG LGGMYTEEAD FMNQLLASYE QPCGGSSSET TATLSAYHHG QGSHWPSSFC  60
FSQESSSYSG YCTVVPQQED DNNRMEDATI NTNVYLVGEE TSECDVAEYS GKSLLPLETV  120
EESHDHHSMV QPENSLTTTT DEKLSSKKRM RPTSTDKNKR ANKARRSQKF VEMSGDNENS  180
GEEEYTEKAR GKRKAKLKLP KTCCSDDDES NGIDTSFSKE DGEDSKALNL NGKTRASRGA  240
ATDPQSLYAR KRRERINERL RILQNLVPNG TKVDISTMLE EAVQYVKFLQ LQIKLLSSDD  300
LWMYAPIAYN GMDIGLDLKL NALTR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.9228s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5775840.0AJ577584.1 Arabidopsis thaliana mRNA for putative bHLH084 transcription factor (bHLH084 gene).
GenBankDQ4464970.0DQ446497.1 Arabidopsis thaliana clone pENTR221-At2g14760 basic helix-loop-helix protein/bHLH protein (At2g14760) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299327.10.0transcription factor bHLH84 isoform X2
SwissprotQ7XHI90.0BH084_ARATH; Transcription factor bHLH84
TrEMBLR0I2S20.0R0I2S2_9BRAS; Uncharacterized protein
STRINGCagra.9228s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28342663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-165bHLH family protein