PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

MYB_related

Protein Properties

Length: 174aa MW: 19405.4 Da PI: 4.6865

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.8966s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.3	2e-14	22	70	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 +g+WT eEd++l+++++ +G g W++ a+ gRt++++k++w++ Cagra.8966s0001.1.p 22 KGPWTMEEDLILINYIANHGEGVWNSLAKSAAkhlPGRTDNEIKNFWRT 70 79******************99999877666666*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.9E-20	17	79	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.425	17	76	IPR017930	Myb domain
SuperFamily	SSF46689	2.23E-13	18	80	IPR009057	Homeodomain-like
SMART	SM00717	8.0E-10	21	74	IPR001005	SANT/Myb domain
Pfam	PF00249	7.4E-13	22	70	IPR001005	SANT/Myb domain
CDD	cd00167	9.48E-12	24	70	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MEKREGSGTG GSGSSGDADV RKGPWTMEED LILINYIANH GEGVWNSLAK SAAKHLPGRT 60 DNEIKNFWRT KIQKYIIKNG ETTTTAGLQS SEIMNHHVTS TSKVLNDTLE EPMDLYSPTT 120 SYQYANNIDH LQLSYGTYVP ESDSIMMPLS IDQAEQNYWS VDDLWPMHLY NGN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting redundantly with MYB21 and MYB57 to control stamen filament elongation in the late developed flowers. Contributes with MYB21 to induction of MYB108 by jasmonate. Repressed at the transcript levels by DELLA proteins. {ECO:0000269\|PubMed:16805732, ECO:0000269\|PubMed:16972096, ECO:0000269\|PubMed:19091873, ECO:0000269\|PubMed:19325888, ECO:0000269\|PubMed:21447791}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.8966s0001.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by jasmonate. {ECO:0000269\|PubMed:16805732}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006285780.1	1e-105	transcription factor MYB24
Swissprot	Q9SPG9	1e-80	MYB24_ARATH; Transcription factor MYB24
TrEMBL	R0H558	1e-104	R0H558_9BRAS; Uncharacterized protein
STRING	Cagra.8966s0001.1.p	1e-126	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G40350.1	9e-83	myb domain protein 24

Link Out ? help Back to Top
Phytozome	Cagra.8966s0001.1.p

Publications ? help Back to Top
Liu Z, et al. A Conserved Cytochrome P450 Evolved in Seed Plants Regulates Flower Maturation. Mol Plant, 2015. 8(12): p. 1751-65 [PMID:26388305] Chen X,Huang H,Qi T,Liu B,Song S New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis. Plant Signal Behav, 2016. 11(2): p. e1135280 [PMID:26829586] Huang H, et al. Arabidopsis MYB24 Regulates Jasmonate-Mediated Stamen Development. Front Plant Sci, 2017. 8: p. 1525 [PMID:28928760]