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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cagra.6652s0005.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
MYB |
| Protein Properties |
Length: 272aa MW: 30682.2 Da PI: 5.5809 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.6652s0005.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 46.2 | 1e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT eEd++l++ + G +W++ ++ g++R++k+c++rw +yl
Cagra.6652s0005.1.p 14 KGPWTVEEDKKLINFILTNGHCCWRALPKLAGLRRCGKSCRLRWTNYL 61
79********************************************97 PP
|
| 2 | Myb_DNA-binding | 51.4 | 2.4e-16 | 71 | 111 | 5 | 47 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+ +E++l +d+++ lG++ W++Ia++++ gRt++++k++w+++
Cagra.6652s0005.1.p 71 SHDEEQLVIDLHAHLGNK-WSKIASRLP-GRTDNEIKNHWNTH 111
789***************.*********.************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 272 aa
Download sequence Send
to blast |
MGRQPCCDKL GVKKGPWTVE EDKKLINFIL TNGHCCWRAL PKLAGLRRCG KSCRLRWTNY 60
LRPDLKRGLL SHDEEQLVID LHAHLGNKWS KIASRLPGRT DNEIKNHWNT HIKKKLIKMG 120
IDPMTHQPLN QEPSNTDQSK TISSNPDDIS KELKTASTKT LDIISGTTTI EDESSSTVTD 180
QNSSMDNENH LLDNNYNDDE LFSYLWSDET TKADASLGDS NYGAVGGTLY DNNNMSTTVS 240
DLPIWSPEGI NDKDWMFLDY CQDFGVHDFG F*
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| Functional Description ? help
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| Source |
Description |
| UniProt | R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning. |
