PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.6400s0003.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 275aa    MW: 31354.7 Da    PI: 5.3665
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.6400s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.19.8e-192269148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd +lv+ v  +G  +W+ Iar  g++Rt+k+c++rw++yl
  Cagra.6400s0003.1.p 22 KGPWTEEEDAILVNFVSIHGDARWNHIARSSGLKRTGKSCRLRWLNYL 69
                         79********************************************97 PP
2Myb_DNA-binding46.87e-1575118146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T eE+  +++++ ++G++ W++Ia++++ gRt++++k++w++
  Cagra.6400s0003.1.p  75 RGNITLEEQFMILKLHSLWGNR-WSKIAQYLP-GRTDNEIKNYWRT 118
                          7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.951773IPR017930Myb domain
SuperFamilySSF466891.12E-3019116IPR009057Homeodomain-like
SMARTSM007175.1E-162171IPR001005SANT/Myb domain
PfamPF002491.6E-162269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-222376IPR009057Homeodomain-like
CDDcd001671.83E-122469No hitNo description
SMARTSM007171.1E-1374122IPR001005SANT/Myb domain
PROSITE profilePS5129418.09874124IPR017930Myb domain
PfamPF002491.8E-1375118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-2277123IPR009057Homeodomain-like
CDDcd001671.90E-1079118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEDYERNSNS PTHHEEDSDV RKGPWTEEED AILVNFVSIH GDARWNHIAR SSGLKRTGKS  60
CRLRWLNYLR PDVRRGNITL EEQFMILKLH SLWGNRWSKI AQYLPGRTDN EIKNYWRTRV  120
QKQAKHLRCD VNSNLFKDTM RNVWMPRLVE RINAQSSPST CELSESMITD PGQRVDEPSP  180
VEPGFLQFNP IHHDQQLVPA AEVSAASSNS PAETLSDVVV NGSAGYDPIG QTGFAGFNDW  240
GCVGGDNMWT NDDESLWFLQ DQLLSHETTS YSYN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-26191244108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.6400s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2291400.0AK229140.1 Arabidopsis thaliana mRNA for MYB transcription factor, complete cds, clone: RAFL16-42-L19.
GenBankAY5195790.0AY519579.1 Arabidopsis thaliana MYB transcription factor (At2g47190) mRNA, complete cds.
GenBankBT0109490.0BT010949.1 Arabidopsis thaliana At2g47190 gene, complete cds.
GenBankBT0116560.0BT011656.1 Arabidopsis thaliana At2g47190 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294780.10.0transcription factor MYB78
TrEMBLR0HUB10.0R0HUB1_9BRAS; Uncharacterized protein
STRINGCagra.6400s0003.1.p0.0(Capsella grandiflora)
STRINGXP_006294780.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.11e-175myb domain protein 2