PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cagra.5414s0037.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 305aa MW: 34470.7 Da PI: 4.8892 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.3 | 2.7e-18 | 60 | 113 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ +q+++Le+ Fe ++++ e++++LA++lgL+ rqV vWFqNrRa++k Cagra.5414s0037.1.p 60 KKRRLRVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWK 113 45578899*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.3 | 3.2e-41 | 59 | 151 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrl +qvk+LE++Fe e+kLeperK++la+eLglqprqvavWFqnrRAR+ktkqlEkdy +Lk++yd+l+++ ++L++++++L +e Cagra.5414s0037.1.p 59 EKKRRLRVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKSQYDSLRHNFDTLRRDNDSLLQE 148 69*************************************************************************************999 PP HD-ZIP_I/II 91 lke 93 +++ Cagra.5414s0037.1.p 149 ISK 151 875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.13E-19 | 46 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.811 | 55 | 115 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-16 | 58 | 119 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.5E-15 | 60 | 113 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.61E-16 | 60 | 116 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-19 | 63 | 122 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 7.1E-6 | 86 | 95 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 90 | 113 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.1E-6 | 95 | 111 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.7E-16 | 115 | 156 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0030308 | Biological Process | negative regulation of cell growth | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 305 aa Download sequence Send to blast |
MKRLSSSDSM CALISTSTDE QSPRGYGSNY QSMLEGYDED ATLMEEYSGN HHHHMGLSEK 60 KRRLRVDQVK ALEKNFELEN KLEPERKTKL AQELGLQPRQ VAVWFQNRRA RWKTKQLEKD 120 YGVLKSQYDS LRHNFDTLRR DNDSLLQEIS KIKAKISVEE ENNNNNNKAT TESVKEEEVS 180 LPESSHKTDS TPSSPPQFLE HSTGFNYRRS FTDLRDLLPN STAVGDAGSS DSCDSSAVLN 240 EDTSSDNGRL TPPATVTGGS FLQCVKMEQT EDHDDFLSGE EACGFFSDEQ PPSLHWYSAS 300 DHWT* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 107 | 115 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00051 | PBM | Transfer from AT4G40060 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Cagra.5414s0037.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF370620 | 0.0 | AF370620.1 Arabidopsis thaliana homeodomain-like protein (T5J17.230) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006284193.1 | 0.0 | homeobox-leucine zipper protein ATHB-16 | ||||
Swissprot | Q940J1 | 0.0 | ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16 | ||||
TrEMBL | R0F6G2 | 0.0 | R0F6G2_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.5414s0037.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM545 | 28 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G40060.1 | 1e-169 | homeobox protein 16 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cagra.5414s0037.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|