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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cagra.4497s0014.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
MYB |
| Protein Properties |
Length: 239aa MW: 26952.9 Da PI: 9.9797 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.4497s0014.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 52.8 | 9e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WT eEd +l+ vk++G+g+W + a++ g+ R++ +c++rw +yl
Cagra.4497s0014.1.p 14 KGEWTDEEDRKLAAFVKEHGSGHWGSLAKKAGLQRCGRSCRLRWMNYL 61
799*******************************************97 PP
|
| 2 | Myb_DNA-binding | 46.4 | 8.8e-15 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg++++ E++++ + +++ G++ W+ Ia++++ +Rt+ ++k++w++
Cagra.4497s0014.1.p 67 RGKFSPHEEQQIFKFHALIGNR-WAVIAKHIP-NRTDHDIKNYWNS 110
89********************.*********.***********96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 239 aa
Download sequence Send
to blast |
MGRMTWFDDE GMKKGEWTDE EDRKLAAFVK EHGSGHWGSL AKKAGLQRCG RSCRLRWMNY 60
LSPDIKRGKF SPHEEQQIFK FHALIGNRWA VIAKHIPNRT DHDIKNYWNS RLKKRLAKER 120
NKPATTHEPA ATSPSPTPST TTTSSSSSFF CSTGSARLLN KLATGIASRK YRLDKIKMVI 180
LQPRKASGKE KMLITMEEED LIACFMDIDE RLMSTTPFCE GSTATTTSLV AFDDCSIV*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC254608 | 9e-52 | AC254608.1 Capsella rubella clone CAP16-D12, complete sequence. |
