PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4395s0036.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family YABBY
Protein Properties Length: 189aa    MW: 21155.1 Da    PI: 9.5468
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4395s0036.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY254.41.9e-7821642170
                YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekees 91 
                          +v+ sse+vCyv+CnfC+tilavsvP++slf++vtvrCGhCt+lls+n+ ++ ++ +          ++++++l+ ++++++s v++++ 
  Cagra.4395s0036.1.p   2 SVDLSSERVCYVHCNFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQSSP---------PPIHQDLQPHKQHITSSVTRKDY 82 
                          67889********************************************998876554.........45888888888888888888877 PP

                YABBY  92 astsvssekl....senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                           s+s+s++++    sen d+e+pr+pp irPPekrqrvPsaynrfikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl
  Cagra.4395s0036.1.p  83 GSSSRSTNHMsttmSENIDREAPRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGL 164
                          7777776666555599********999.9****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.2E-726164IPR006780YABBY protein
SuperFamilySSF470951.11E-7109157IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.7E-4112158IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MSVDLSSERV CYVHCNFCTT ILAVSVPYAS LFTLVTVRCG HCTNLLSLNI GVSLHQSSPP  60
PIHQDLQPHK QHITSSVTRK DYGSSSRSTN HMSTTMSENI DREAPRMPPI RPPEKRQRVP  120
SAYNRFIKEE IQRIKACNPE ISHREAFSTA AKNWAHFPHI HFGLKLDGNK KGKQLDQTVA  180
SQKSNGYC*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4395s0036.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533260.0AK353326.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-D23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303358.11e-140putative axial regulator YABBY 2
SwissprotQ9XFB01e-125YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLR0GKG11e-139R0GKG1_9BRAS; Uncharacterized protein
STRINGCagra.4395s0036.1.p1e-140(Capsella grandiflora)
STRINGXP_006303358.11e-140(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55812749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.11e-127YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]