PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.4082s0011.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bHLH | ||||||||
Protein Properties | Length: 173aa MW: 19003.9 Da PI: 6.3473 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.5 | 1.4e-09 | 52 | 92 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r RR+ri ++f L++++P a K++ +++L +A++Y+k L Cagra.4082s0011.1.p 52 ARERRHRISDRFKILQSMVPGgA------KMDTVSMLDEAIRYVKFL 92 699*****************966......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.097 | 43 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.29E-14 | 48 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.16E-12 | 49 | 96 | No hit | No description |
SMART | SM00353 | 3.8E-12 | 49 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.9E-12 | 49 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.9E-7 | 52 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MDDFNLSSQN PNSSSTTSSS SSPFHGHSSE TGKTKRSRST STLSTDPQSV AARERRHRIS 60 DRFKILQSMV PGGAKMDTVS MLDEAIRYVK FLKAQIWFHQ NMLVFLNDHE ATSSCTYSPA 120 AGGFEPTLFG CDDDYAPVNE TYSQGMPLTL TDSKYSPWFG SVGSYEQERG SS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.4082s0011.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL161746 | 1e-159 | AL161746.2 Arabidopsis thaliana DNA chromosome 5, BAC clone T10O8 (ESSA project). | |||
GenBank | CP002688 | 1e-159 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023637638.1 | 1e-127 | transcription factor bHLH140 | ||||
Swissprot | Q9M041 | 3e-88 | BH140_ARATH; Transcription factor bHLH140 | ||||
TrEMBL | A0A178UDM7 | 9e-95 | A0A178UDM7_ARATH; Transcription factor bHLH140-like protein | ||||
TrEMBL | A0A384K8T2 | 9e-95 | A0A384K8T2_ARATH; Uncharacterized protein | ||||
STRING | Cagra.4082s0011.1.p | 1e-126 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15290 | 14 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01310.1 | 1e-68 | APRATAXIN-like |
Link Out ? help Back to Top | |
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Phytozome | Cagra.4082s0011.1.p |
Publications ? help Back to Top | |||
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