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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cagra.4003s0023.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
MYB |
| Protein Properties |
Length: 165aa MW: 19264 Da PI: 8.5956 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.4003s0023.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 44.6 | 3.3e-14 | 15 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd +lvd + G + +W+ +++ g++R++k+c++rw +yl
Cagra.4003s0023.1.p 15 KGPWTAEEDGKLVDFLRTRGDRggwCWRDVPKLAGLRRCGKSCRLRWTNYL 65
79***********************************************97 PP
|
| 2 | Myb_DNA-binding | 56.2 | 8.1e-18 | 71 | 115 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg +T+eE +l +d++++lG++ W++Ia +++ gRt++++k++w+++
Cagra.4003s0023.1.p 71 RGLFTEEEIQLVIDLHARLGNR-WSKIAVELP-GRTDNDIKNYWNTH 115
788*******************.*********.************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 165 aa
Download sequence Send
to blast |
MGGRKPCCDE VGLRKGPWTA EEDGKLVDFL RTRGDRGGWC WRDVPKLAGL RRCGKSCRLR 60
WTNYLRPDLK RGLFTEEEIQ LVIDLHARLG NRWSKIAVEL PGRTDNDIKN YWNTHIKRKL 120
IRMGIDPNTH RRFEFNQQKV NEEEKVLLYG DLGYEDLELG CFDD*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF199026 | 1e-132 | AF199026.2 Arabidopsis thaliana putative transcription factor (MYB99) mRNA, complete cds. |
| GenBank | AK175687 | 1e-132 | AK175687.1 Arabidopsis thaliana mRNA for MYB99, complete cds, clone: RAFL22-21-A14. |
| GenBank | AY519644 | 1e-132 | AY519644.1 Arabidopsis thaliana MYB transcription factor (At5g62320) mRNA, complete cds. |
| GenBank | DQ447105 | 1e-132 | DQ447105.1 Arabidopsis thaliana clone pENTR221-At5g62320 myb family transcription factor (At5g62320) mRNA, complete cds. |
| GenBank | DQ653390 | 1e-132 | DQ653390.1 Arabidopsis thaliana clone 0000017240_0000012066 unknown mRNA. |
