PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3954s0025.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 369aa    MW: 41561.7 Da    PI: 8.6435
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3954s0025.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.21.7e-07211233123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C++Cgk F+r  nL+ H+r H
  Cagra.3954s0025.1.p 211 HYCQICGKGFKRDANLRMHMRAH 233
                          68*******************99 PP
2zf-C2H212.40.00046332347621
                          TTEEESSHHHHHHHHH CS
              zf-C2H2   6 CgksFsrksnLkrHir 21 
                          Cg++Fsrk+ L++H +
  Cagra.3954s0025.1.p 332 CGTRFSRKDKLMSHVS 347
                          **************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.65E-6209236No hitNo description
SMARTSM003550.0028211233IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.632211238IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-6211238IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280213233IPR007087Zinc finger, C2H2
SMARTSM00355160262295IPR015880Zinc finger, C2H2-like
SMARTSM0035573300322IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MMNQDDHLTS KGEGSMSSFS GTTATSSKQN YVNTVTTAGV KSLEDDDASL SLLYNLSTLQ  60
DKVHQTQSLV SFYMISTNNI NQSSGSTSLA VANIGSLVQE IITAASSMLF TCQQLNIGSN  120
NNNDNDQTAD HAMVLEFSRQ ETEPGHNFVQ ESTNLFGVQE RGQISFPDQN LEWFGTQTLN  180
PKKEYHRSKQ RSGNYEILEL DVADLLAKYT HYCQICGKGF KRDANLRMHM RAHGDEYKTR  240
EALISPISQD KKGDYSLKKH YYSCPQQGCR WNQRHEKFQP LKSVICAKNH YKRSHCPKMY  300
MCRRCSVKHF SVLSDLRTHE KHCGDIKWVC SCGTRFSRKD KLMSHVSLFL GHVPAHGSSA  360
PTTTIKRS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3954s0025.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0052430.0AB005243.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRN17.
GenBankAK2277400.0AK227740.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-31-P16.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289136.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
SwissprotQ0WT240.0STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLR0GYR70.0R0GYR7_9BRAS; Uncharacterized protein
STRINGCagra.3954s0025.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57522547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.10.0C2H2 family protein