PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3126s0010.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 302aa    MW: 33581.6 Da    PI: 10.3192
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3126s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_121.84.1e-07279302427
                          XCHHHCHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKkae 27 
                          ++r +r++kNRe+A rsR+RK+++
  Cagra.3126s0010.1.p 279 DRRHKRMIKNRESAARSRARKQER 302
                          799*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.2E-4272302No hitNo description
CDDcd147073.36E-13280302No hitNo description
PROSITE patternPS000360283298IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:2000028Biological Processregulation of photoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MSAKSVLAQP SGQSSCVRPE QLSHGGTKNQ HQWNSYDNQN GNQQRHGGWR SHGYGNQNLN  60
LREGFIQAPR GIPGYVIHAP PPMPLVFDRY MLPTYQPCYH FGSPMVSHDK AFYAVLFCSP  120
MLSSAKHNKI NHSAFSVSSS SSSSQGQNKS QVTMEEVWKE INLGSLHYHR QVNIGHEPML  180
KNQNPNNNSI FQDFLNMPLK QQPPLPPSSS SSIVTALYGS PLPIPPPATV LSLYSGVGFK  240
FLDNTDTLVA SNPNSFEGSA RFGCFGKKRG QDSDGSRGDR RHKRMIKNRE SAARSRARKQ  300
ER
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:23543784}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3126s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ1771551e-143GQ177155.1 Arabidopsis thaliana ecotype Wt-5 FDP gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299789.21e-127bZIP transcription factor 27
SwissprotQ7PCC63e-87FDP_ARATH; bZIP transcription factor 27
TrEMBLR0GAE81e-126R0GAE8_9BRAS; Uncharacterized protein
STRINGCagra.3126s0010.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19342772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17770.25e-77basic region/leucine zipper motif 27
Publications ? help Back to Top
  1. Jang S,Li HY,Kuo ML
    Ectopic expression of Arabidopsis FD and FD PARALOGUE in rice results in dwarfism with size reduction of spikelets.
    Sci Rep, 2017. 7: p. 44477
    [PMID:28290557]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]