PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.2636s0014.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 320aa MW: 35520.7 Da PI: 6.1358

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.2636s0014.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.4	6.1e-09	187	234	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + +++++sLq Cagra.2636s0014.1.p 187 NHSLAERARREKINARMKLLQELVPGC----DKIQGTALVLDEIINHVQSLQ 234 79**********************9....889**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.23E-15	181	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.98E-9	181	238	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.9E-15	183	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.634	183	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-6	187	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-8	189	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MDLTHGFGAR SGIGPVTGLE SLNFSDEFRQ LVTTMPPENS GGSFTALLEM PVTQAMELLH 60 FTDSSSSQAN ITKLAGDTAH HPFGTLTFPS NSLLLDRAAR FSVIATEQNG YISGETPSSS 120 ANLDRVKAEP AETDSVSENQ NLKQNQNKRK EREKKAKSSM KKTKSSVEED KLPYVHVRAR 180 RGQATDNHSL AERARREKIN ARMKLLQELV PGCDKIQGTA LVLDEIINHV QSLQRQVEML 240 SMRLAAVNPR IDFNLDTILA SENGSLMDGS FNGESYHQLQ QWPFDGYHQP EWGREEDQHH 300 ADFPMGSTTL QPNQVKMEL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.2636s0014.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK176634	0.0	AK176634.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH048), complete cds, clone: RAFL25-17-F11.
GenBank	AY065411	0.0	AY065411.1 Arabidopsis thaliana unknown protein (At2g42300) mRNA, complete cds.
GenBank	AY096521	0.0	AY096521.1 Arabidopsis thaliana unknown protein (At2g42300) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023640740.1	0.0	transcription factor bHLH48
Swissprot	Q8VZ02	0.0	BH048_ARATH; Transcription factor bHLH48
TrEMBL	R0FXN3	0.0	R0FXN3_9BRAS; Uncharacterized protein
STRING	Cagra.2636s0014.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2576	27	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42300.1	1e-180	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cagra.2636s0014.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]