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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.1981s0006.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
MYB |
Protein Properties |
Length: 339aa MW: 39017.3 Da PI: 6.3739 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.1981s0006.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 55.5 | 1.3e-17 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++l d+++ +G g+W+t ++ g+ R++k+c++rw +yl
Cagra.1981s0006.1.p 15 KGPWTPEEDKKLTDYINIHGYGNWRTLPKNAGLERCGKSCRLRWTNYL 62
79********************************************97 PP
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2 | Myb_DNA-binding | 53.2 | 6.8e-17 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rgr++ eE+e +++++ +G++ W++Ia++++ gRt++++k++w+++
Cagra.1981s0006.1.p 68 RGRFSFEEEETIIQLHSIMGNK-WSAIAARLP-GRTDNEIKNYWNTH 112
89********************.*********.************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 339 aa
Download sequence Send
to blast |
MGRSPCCEKK NGLKKGPWTP EEDKKLTDYI NIHGYGNWRT LPKNAGLERC GKSCRLRWTN 60 YLRPDIKRGR FSFEEEETII QLHSIMGNKW SAIAARLPGR TDNEIKNYWN THIRKRLLKM 120 GIDPVTHSPR LDLLDISSIL NSSLFNSSHH HQHMNMSTRL MMMGDGHSHQ SLVDPEILKL 180 ATSLFSNQNN THENQTEVNQ YQTGYNMSSN QELQYWFPIM DQFTEFQDLI TPMKTTVQDS 240 TPSLPSNYDD DYSKPNSVLE PFYSDFASVL TTPSSSPTPL NSSSTTYINS STSSTEDEKE 300 SYYSNNNITS TSEIPDYSFD FNGFLQFQET RNHWDRVM*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that may function in salt stress response. {ECO:0000305|PubMed:26139822}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:26139822}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF386932 | 0.0 | AF386932.1 Arabidopsis thaliana Unknown protein mRNA, complete cds. |
GenBank | BT001182 | 0.0 | BT001182.1 Arabidopsis thaliana Unknown protein (At4g05100) mRNA, complete cds. |
Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Xu R, et al.
Salt-induced transcription factor MYB74 is regulated by the RNA-directed DNA methylation pathway in Arabidopsis. J. Exp. Bot., 2015. 66(19): p. 5997-6008 [PMID:26139822] - Huang KC,Lin WC,Cheng WH
Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615]
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