PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

MYB

Protein Properties

Length: 332aa MW: 36771.1 Da PI: 6.9365

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1659s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.7	1.3e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ + g++R+ k+c++rw +yl Cagra.1659s0003.1.p 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTHTGLRRCSKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	48.3	2.3e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l Cagra.1659s0003.1.p 67 RGNFTQHEEKMILHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.4E-25	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	26.71	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	6.88E-31	11	108	IPR009057	Homeodomain-like
SMART	SM00717	2.7E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	3.4E-17	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	6.13E-12	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.3E-24	65	117	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.067	66	116	IPR017930	Myb domain
SMART	SM00717	1.1E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	8.7E-14	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	3.48E-11	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0009733	Biological Process	response to auxin
GO:0009737	Biological Process	response to abscisic acid
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0046686	Biological Process	response to cadmium ion
GO:0080167	Biological Process	response to karrikin
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTHTGLRRCS KSCRLRWTNY 60 LRPGIKRGNF TQHEEKMILH LQALLGNRWA AIASYLPERT DNDIKNYWNT HLKKKLKKMN 120 DSCDSTINNG VDSKDLSSPN KNTTSNQSNS SSKGQWERRL QTDINMAKQA LCDALSLDKP 180 QSQTNFSITD LGYGPSSSSS STTTTTTKST NPYPSGVYAS SAENIARLLQ NFMKDTPKTS 240 VPSPVAATEM AITTAASSPS TTEGEGEGID HSLFSFNSMD EAEEKPKVID HDINGLITQG 300 SLSLFEKWLF DEQSHDMIIN NMSLEGQEVL F*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	3e-26	14	116	4	105	C-Myb DNA-Binding Domain
1msf_C	3e-26	14	116	4	105	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the activation of cuticular wax biosynthesis under drought stress. Binds directly to the promoters of genes involved in cuticular wax biosynthesis. Transactivates WSD1, KCS2/DAISY, CER1, CER2, FAR3 and ECR genes (PubMed:25305760, PubMed:27577115). Functions together with MYB96 in the activation of cuticular wax biosynthesis (PubMed:27577115). {ECO:0000269\|PubMed:25305760, ECO:0000269\|PubMed:27577115}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00395	DAP	Transfer from AT3G47600	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1659s0003.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt stress, osmotic shock and abscisic acid (ABA). {ECO:0000269\|PubMed:25305760}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY519595	0.0	AY519595.1 Arabidopsis thaliana MYB transcription factor (At3g47600) mRNA, complete cds.
GenBank	BT002802	0.0	BT002802.1 Arabidopsis thaliana clone RAFL15-01-L01 (R20190) putative transcription factor MYB94 (At3g47600) mRNA, complete cds.
GenBank	BT004361	0.0	BT004361.1 Arabidopsis thaliana clone U20190 putative transcription factor MYB94 (At3g47600) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006291477.1	0.0	myb-related protein 306
Swissprot	Q9SN78	0.0	MYB94_ARATH; Transcription factor MYB94
TrEMBL	R0HGR9	0.0	R0HGR9_9BRAS; Uncharacterized protein
STRING	Cagra.1659s0003.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	0.0	myb domain protein 94

Link Out ? help Back to Top
Phytozome	Cagra.1659s0003.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Cui F, et al. Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation. Mol Plant, 2016. 9(6): p. 926-38 [PMID:27060495] Lee SB,Kim HU,Suh MC MYB94 and MYB96 Additively Activate Cuticular Wax Biosynthesis in Arabidopsis. Plant Cell Physiol., 2016. 57(11): p. 2300-2311 [PMID:27577115]