PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1562s0042.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 1356aa    MW: 153977 Da    PI: 6.3375
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1562s0042.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY863.4e-2712071263459
                           SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY    4 gynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59  
                           ++ WrKYGqK++kgs +prsYYrC+s+ +C+++k+ver ++dp+++ itY +eHnh+
  Cagra.1562s0042.1.p 1207 QWGWRKYGQKPIKGSVYPRSYYRCSSSkDCSARKQVERYQTDPNMLLITYFSEHNHP 1263
                           689**********************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002550.00285136IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF522004.84E-8694IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015824.8E-51497IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF525401.18E-49129390IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009318.6E-28156400IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3004.9E-10163282IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003641.4E-21165180No hitNo description
PRINTSPR003641.4E-21237251No hitNo description
PRINTSPR003641.4E-21330344No hitNo description
SuperFamilySSF467852.72E-11367451IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF520583.49E-28505817IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.2E-26506812IPR032675Leucine-rich repeat domain, L domain-like
PfamPF077259.1E-9570589IPR011713Leucine-rich repeat 3
PRINTSPR003641.4E-21744760No hitNo description
PROSITE profilePS5081128.0711991265IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.6E-2612061265IPR003657WRKY domain
SuperFamilySSF1182902.22E-2312061265IPR003657WRKY domain
PfamPF031069.9E-2312081263IPR003657WRKY domain
SMARTSM007741.9E-2812081264IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007165Biological Processsignal transduction
GO:0005774Cellular Componentvacuolar membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1356 aa     Download sequence    Send to blast
MADSEKSVYI SCVEEVRYSF VSHLSEALRR KGIHDVFVDS DDLLSEESQS KVEGARVSVM  60
ILPSNRTVCL DKLVKVLECQ KNRDQLVVPV LYGTRSLEIE WLRALDSKGL TSVHQSRKEC  120
SDSTLVKEIV RDVYEKLFCM ERIGVYSKLL EIEKMVCKQP LGIRCVGIWG MPGIGKTTLA  180
RAVFDQMSGE FDAYCFIEDY TKAIQEKGLY RLLEEQFLKE KPGASGTITK LSLLRDKLNN  240
QRVLVVLDDV RNPLVVESFL GGFDWFGPKS LIIITSRDRQ VFRLCRVDQI YEVQGLNEKE  300
AFQLFSLCAS IDDMAEQNLH EVSMKVVKYA DGHPLALNTY GNELKGKKIP SEMETSFLEL  360
KERPPTKFVD AIKSCYDTLN DMEKNIFLDI ACFFQGENVN YVMQLLDGCG FFPHVGIDVL  420
VEKCLVTISE NRVRMHNLTQ DVGREIINRE TIHTKRRIRL WESWCIKFLL ENLEQKNNGE  480
HEKTFKRAQG TEEIEGMFLD TSNISFDIKP AAFDNMLNLR LLKIYSSNSE VHNVYNVLKE  540
SLYSLPNELR LLHWENYPLQ NLPQNFDPMH LVEINMPYSQ LKKLWGGTKP LDMLRTIRLC  600
HSQQLVDMDD LLIAQNLEVI DLQGCTRLQS FPAIGHFLHL RIVNLSGCTE IKSFPEIPPN  660
IESLHLQRTG ITELPLSIVK PNYREILTLL GEIPGLSGVS NLEESDLKPL TSLMKVSTSN  720
QNLGKLIFLE LKDCSRLRSL PNMDNLELLR VLDLSGCSEL EVIQGFPRNL KELYLAGTVV  780
RQLPQLPQTL EVFNANGCVS LKSIRLNFEK LPVHYLFSDC FDLSPQMVND FLARALANAE  840
HIPRERQQEL NEALAFSFCA PSHADQNSKL DLQRGSSVMI QLNPSWRNTL VGFAMLVEVA  900
FSEDYCDTTG FGISCVCKWK NKEGHSHRIK RDLHCWGLGN TVSKVQKDHM FVFCDVNMRP  960
GTDEENDLNI WADLVAFEFV PVNDKMTPIG DSCTVIRCGV RVITAATSST SLENISPVLS  1020
LDPMKVSGYE LFLEEVLRDN YVKLKEMDKF LFLYIACLFS DEDVDLLAPL IDGTDLDVSS  1080
GLKVLAGRSL ISVSSNGEIA MHASLRKMGR EFLHRKYMLP GSSKKNKRMV ENSMSSITTH  1140
SKNLQKRLRG TDKEILHTES KKIERLGDKS MISSRKPERT RRRTVVSTSY LVDPASQSGE  1200
DAAGFEQWGW RKYGQKPIKG SVYPRSYYRC SSSKDCSARK QVERYQTDPN MLLITYFSEH  1260
NHPCPTESNA LAGSIRSSSS SKCSVITTSG SSKVSRNKDE SNKLHFPSSR NPLHVAEGVK  1320
EGSMDERFDN MEVDNDVEAT VLPEIFFDYD ESQLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4c6t_A6e-4321443151PROBABLE WRKY TRANSCRIPTION FACTOR 52
4c6t_C6e-4321443151PROBABLE WRKY TRANSCRIPTION FACTOR 52
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Acts also as a disease resistance protein that specifically recognizes the AvrRps4 type III effector avirulence protein from P.syringae. Heterodimerization with RPS4B is required to form a functional complex to recognize AvrRps4 and to mediate the hypersensitive response (PubMed:25744164). {ECO:0000250|UniProtKB:P0DKH5, ECO:0000269|PubMed:25744164}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1562s0042.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006279896.10.0probable WRKY transcription factor 16
SwissprotQ9FL920.0RRS1B_ARATH; Disease resistance protein RRS1B
TrEMBLR0G8C30.0R0G8C3_9BRAS; Uncharacterized protein
STRINGCagra.1562s0042.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2506814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45050.10.0Disease resistance protein (TIR-NBS-LRR class)