PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1390s0010.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 356aa    MW: 39653.7 Da    PI: 8.3692
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1390s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.7e-1768113148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
  Cagra.1390s0010.1.p  68 RGKFTVQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 113
                          89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.1823762IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.4E-114875IPR009057Homeodomain-like
SuperFamilySSF466891.96E-2148121IPR009057Homeodomain-like
PROSITE profilePS5129426.75363117IPR017930Myb domain
SMARTSM007172.6E-1767115IPR001005SANT/Myb domain
PfamPF002491.5E-1668113IPR001005SANT/Myb domain
CDDcd001674.07E-1270113No hitNo description
Gene3DG3DSA:1.10.10.601.0E-2276114IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010091Biological Processtrichome branching
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MAMEAGVLCR RKPVTPHLSA LYSSTNRIYS SLSSISIETF LKLLIGLQRC GKSCRLRWTN  60
YLRPDIKRGK FTVQEEQTII QLHALLGNRW SAIATHLPKR TDNEIKNYWN THLKKRLLKM  120
GIDPVTHKHK NETLSSSTGQ SKNAATLSHM AQWESARLEA EARLARESKL LHLQHYQNNN  180
LNKSGPQHCF THKTSTNWTK PNEGSGDQQL ESPTSTVTFS ENLPLMIMPL GIPTDIRNRN  240
NNIESSELPA MIEFAVSSST SSDVSLVKEH ENDWIRQINC PCPTEGIGEG FTSLLLGDSV  300
GRSLSTGKVE ATASSVAGAG VVSESEYNYY EDNKNYWNSI LNLVDSSPSD SQAMF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-184911740108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1390s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2493090.0AF249309.1 Arabidopsis thaliana putative transcription factor (MYB106) mRNA, complete cds.
GenBankAY5195810.0AY519581.1 Arabidopsis thaliana MYB transcription factor (At3g01140) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023641618.10.0transcription factor MYB106 isoform X1
SwissprotQ9LE631e-175MY106_ARATH; Transcription factor MYB106
TrEMBLR0HW260.0R0HW26_9BRAS; Uncharacterized protein
STRINGCagra.1390s0010.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.11e-141myb domain protein 106