PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1317s0004.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 347aa    MW: 39036.2 Da    PI: 4.3752
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1317s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.82.6e-15781621097
                          HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                            + + lvlp +f   + ++++ +kt+t++++ g+ W++ l  rk++g    +vl +GWk+ vk+ +L+ gD + F++dg+++f  ++++
  Cagra.1317s0004.1.p  78 GESGDDLVLPISFN--CCLPNPLPKTVTIRSTYGKIWNMVL--RKCGGDverFVLVNGWKKIVKDEDLNGGDLLAFEFDGSRCF--NFSI 161
                          4555779*****95..65677899*****************..666665667***************************99999..6666 PP

                          E CS
                   B3  97 f 97 
                          +
  Cagra.1317s0004.1.p 162 Y 162
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-1564164IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-1865163IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.63369165IPR003340B3 DNA binding domain
CDDcd100176.87E-1371162No hitNo description
SMARTSM010191.4E-1671165IPR003340B3 DNA binding domain
PfamPF023625.0E-1378162IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-6246340IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-9247341IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.068253342IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MVSTPGLFNL EPGSSWFTES VQEKQEVDDN EPRFPTFSVS DSSIVMCCRH LCSSFCSFGT  60
GNSSNGSTSK FFKAYVPGES GDDLVLPISF NCCLPNPLPK TVTIRSTYGK IWNMVLRKCG  120
GDVERFVLVN GWKKIVKDED LNGGDLLAFE FDGSRCFNFS IYEHETMCKR VKRNAEQNLE  180
SDGEEETRTS NDVIVLHDDD TDDSDSDYHH ASVEDDDDAE DEDVEPEPED DAENEHDDDV  240
EDEDKDDHRN PQFTVTLNPN RKSQLHIPAH VIRDFDLTFP ERITVVDKLG ALEKEIKIQV  300
NGCIFVKGFG SVFRRNKVKT TDQMICEVKR TGANVVHTIK VNIIRG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1317s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4938021e-85AB493802.1 Arabidopsis thaliana At5g60140 mRNA for hypothetical protein, partial cds, clone: RAAt5g60140.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282152.20.0B3 domain-containing protein At5g60140
SwissprotQ9FHB01e-125Y5014_ARATH; B3 domain-containing protein At5g60140
TrEMBLR0GRU60.0R0GRU6_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.1317s0004.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60130.25e-88B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]