PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

MYB

Protein Properties

Length: 343aa MW: 38439.1 Da PI: 6.0942

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1085s0031.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.9	5.5e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ede+lv++v+++G +W++ ++ g++R++k+c++rw +yl Cagra.1085s0031.1.p 14 KGPWTPDEDEKLVNYVQEHGHSSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	53.8	4.6e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr++++E++ +++++ lG++ W+tIa+ ++ gRt++++k++w+++l Cagra.1085s0031.1.p 67 RGRFSPDEEQTILNLHSVLGNK-WSTIANQLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.5E-24	6	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.088	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.39E-31	11	108	IPR009057	Homeodomain-like
SMART	SM00717	5.0E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-17	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	4.95E-12	16	61	No hit	No description
PROSITE profile	PS51294	26.031	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.8E-27	65	117	IPR009057	Homeodomain-like
SMART	SM00717	4.3E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	4.5E-15	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	3.76E-11	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MGRPPSSDDS GLKKGPWTPD EDEKLVNYVQ EHGHSSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGRF SPDEEQTILN LHSVLGNKWS TIANQLPGRT DNEIKNFWNT HLKKKLIQMG 120 IDPMTHRPRT DIFSGLSQLM SMSSNLRGFA DLQQQFPISQ EHTILMRLQT EMAKLQLFQY 180 LLQPSSFMNT INPNDLDSLS LLNSIASFKE TTTTTTSNTL DLGCLGSYLQ DFNSLPSLKT 240 LNSNSMEPSS VFPQNPDDNH FKFFTQRQNL PVSPIWLSDP SSSTQSLTLP NSVVTDDLIR 300 NQYGVEDVNS NITSSSCQES AASASAAWPD HLLDDSIFSD IP*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MGRPPSSDDS GLKKGPWTPD EDEKLVNYVQ EHGHSSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGRF SPDEEQTILN LHSVLGNKWS TIANQLPGRT DNEIKNFWNT HLKKKLIQMG  120
IDPMTHRPRT DIFSGLSQLM SMSSNLRGFA DLQQQFPISQ EHTILMRLQT EMAKLQLFQY  180
LLQPSSFMNT INPNDLDSLS LLNSIASFKE TTTTTTSNTL DLGCLGSYLQ DFNSLPSLKT  240
LNSNSMEPSS VFPQNPDDNH FKFFTQRQNL PVSPIWLSDP SSSTQSLTLP NSVVTDDLIR  300
NQYGVEDVNS NITSSSCQES AASASAAWPD HLLDDSIFSD IP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-29	12	116	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250\|UniProtKB:Q9M2D9}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00503	DAP	Transfer from AT5G10280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1085s0031.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY519619	0.0	AY519619.1 Arabidopsis thaliana MYB transcription factor (At5g10280) mRNA, complete cds.
GenBank	BT002877	0.0	BT002877.1 Arabidopsis thaliana clone RAFL14-88-D17 (R20400) putative myb family transcription factor (At5g10280) mRNA, complete cds.
GenBank	BT004402	0.0	BT004402.1 Arabidopsis thaliana clone U20400 putative myb family transcription factor (At5g10280) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006289596.1	0.0	transcription factor MYB41
Refseq	XP_023637704.1	0.0	transcription factor MYB41
Swissprot	Q9SBF3	0.0	MYB92_ARATH; Transcription factor MYB92
TrEMBL	R0GZZ0	0.0	R0GZZ0_9BRAS; Uncharacterized protein
STRING	Cagra.1085s0031.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10280.1	0.0	myb domain protein 92

Link Out ? help Back to Top
Phytozome	Cagra.1085s0031.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]