PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1085s0002.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 325aa    MW: 36487.6 Da    PI: 5.1041
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1085s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.61.9e-12162205654
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           ++ErrRR+r+N++++ Lr+++Pk      +K++  +iL  A++Y+k+L
  Cagra.1085s0002.1.p 162 LMAERRRRKRLNDRLSMLRSIVPKI-----TKMDRTTILGDAIDYMKEL 205
                          589*********************7.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.447156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.09E-15159222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-10162205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-13162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-16163220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.73E-5163210No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
SFRNREMEME LTQLTNKQES NNLDGLKGGF MAMDQFVPND WNFDYLCFNS PLVETDNVDH  60
PCSSLMNLIS QPPPLLHQPP QPLSPPPPAS SPLSSAFEYP FLEDIIDSSY YPPPLLLPTS  120
QENNNNVYAP LMVESKSFVS TGVMTNKKKS IKKLGGQPSK NLMAERRRRK RLNDRLSMLR  180
SIVPKITKMD RTTILGDAID YMKELLDKIK KLQEDDQELG SNSHLNTLIT DESLVRNSLK  240
FEVDQREVDT HIKICCSTKP GLLLSTVTTL ETLGLEIQQC VISCFSDFSL QASCSEVAEQ  300
RDFVTSEDTK QALIRNAGYG GRCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146168KKKSIKKLGGQPSKNLMAERRRR
2164171ERRRRKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1085s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288244.10.0transcription factor bHLH61
SwissprotQ9LXA91e-168BH061_ARATH; Transcription factor bHLH61
TrEMBLR0FFW20.0R0FFW2_9BRAS; Uncharacterized protein
STRINGCagra.1085s0002.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10570.11e-146bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]