PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

MYB

Protein Properties

Length: 311aa MW: 35018.5 Da PI: 5.9452

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0917s0061.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54	3.9e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd++l+++++++G +W++ ++ g++R++k+c++rw +yl Cagra.0917s0061.1.p 14 KGPWLPEEDDKLIKYIHKHGHSSWSALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	55.9	9.8e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE+e ++++++ lG++ W+ Ia++++ gRt++++k++w+++l Cagra.0917s0061.1.p 67 RGKFSPEEEETILNLHAVLGNK-WSMIASHLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.549	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.71E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	2.0E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-16	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-24	15	68	IPR009057	Homeodomain-like
CDD	cd00167	1.63E-11	16	61	No hit	No description
PROSITE profile	PS51294	27.442	62	116	IPR017930	Myb domain
SMART	SM00717	1.2E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	8.6E-16	67	112	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-28	69	117	IPR009057	Homeodomain-like
CDD	cd00167	8.00E-13	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MGRSPGSDEA GLKKGPWLPE EDDKLIKYIH KHGHSSWSAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SPEEEETILN LHAVLGNKWS MIASHLPGRT DNEIKNFWNT HLKKKLIQMG 120 FDPMTHRPRT DDIFSSLSQL MSLSNLRGVA DLQHQVPIEE QALLNLHAEM AKLQLFQYLL 180 QPPPMSSTSI NPNDLSILNL LIKENSNTSN LDLGFLSSHL QDFNNNLPSL KALDDNQFSQ 240 KSSPIWFSEP PSLNQTMLPF HDPCAQSVDG FCGNQASSSQ DQEVAVTDAV EWPDQQLFDD 300 SMFPDIPYQS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-28	12	116	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250\|UniProtKB:Q9M2D9}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0917s0061.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA) and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY519646	0.0	AY519646.1 Arabidopsis thaliana MYB transcription factor (At5g65230) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006279657.1	0.0	myb-related protein 308
Refseq	XP_023640471.1	0.0	myb-related protein 308
Swissprot	Q9FJP2	0.0	MYB53_ARATH; Transcription factor MYB53
TrEMBL	R0GJT7	0.0	R0GJT7_9BRAS; Uncharacterized protein
STRING	Cagra.0917s0061.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65230.1	1e-172	myb domain protein 53

Link Out ? help Back to Top
Phytozome	Cagra.0917s0061.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]