PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0846s0004.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 341aa    MW: 38186.2 Da    PI: 4.9909
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0846s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.72.4e-49221472128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                           pGf+F+Ptd el+++yLk+k++g + ++ evi+++diy++ePwdLp k++ ++++ew+fF+ r kky++g++++ratk gyWkatgk++
  Cagra.0846s0004.1.p  22 FPGFKFSPTDVELISYYLKRKMDGLERSV-EVIPDADIYNFEPWDLPdKSIVKSDSEWFFFCARGKKYPHGSQNRRATKMGYWKATGKER 110
                          69************************999.99***************778888899********************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +v+s ++e++g+k+tLvf+ grapkge+tdW+mhey +
  Cagra.0846s0004.1.p 111 DVKS-GSEVIGTKRTLVFHIGRAPKGERTDWIMHEYCM 147
                          ****.9******************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-5511163IPR003441NAC domain
PROSITE profilePS5100552.27521164IPR003441NAC domain
PfamPF023657.5E-2523146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009626Biological Processplant-type hypersensitive response
GO:0009910Biological Processnegative regulation of flower development
GO:0034976Biological Processresponse to endoplasmic reticulum stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005783Cellular Componentendoplasmic reticulum
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEAEAIGVSK ATAASVEAST VFPGFKFSPT DVELISYYLK RKMDGLERSV EVIPDADIYN  60
FEPWDLPDKS IVKSDSEWFF FCARGKKYPH GSQNRRATKM GYWKATGKER DVKSGSEVIG  120
TKRTLVFHIG RAPKGERTDW IMHEYCMKGV SLDDAMVVCR VRRNKEYHSG TSQKTPQPNL  180
AAEKHVTLQN GATSSESPSD WDNLVDFYLA DESGEKLLAE MAESSENLQV HNDEDFFADI  240
LKDEIINLDE AVKTGNTPNE IPTLESASME IRVLPLPNVI DKQMSSLLEE RPSQKKKGQD  300
ASESLSSCFV GLYSIKSVNR ARWDVIICVV ALIAMLFYLE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-412316519166NO APICAL MERISTEM PROTEIN
1ut4_B8e-412316519166NO APICAL MERISTEM PROTEIN
1ut7_A8e-412316519166NO APICAL MERISTEM PROTEIN
1ut7_B8e-412316519166NO APICAL MERISTEM PROTEIN
3swm_A7e-412316522169NAC domain-containing protein 19
3swm_B7e-412316522169NAC domain-containing protein 19
3swm_C7e-412316522169NAC domain-containing protein 19
3swm_D7e-412316522169NAC domain-containing protein 19
3swp_A7e-412316522169NAC domain-containing protein 19
3swp_B7e-412316522169NAC domain-containing protein 19
3swp_C7e-412316522169NAC domain-containing protein 19
3swp_D7e-412316522169NAC domain-containing protein 19
4dul_A8e-412316519166NAC domain-containing protein 19
4dul_B8e-412316519166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in plant cell division. {ECO:0000269|PubMed:16803883}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0846s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3856850.0AF385685.1 Arabidopsis thaliana AT5g22290/MWD9_7 mRNA, complete cds.
GenBankAY0780060.0AY078006.1 Arabidopsis thaliana AT5g22290/MWD9_7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288125.10.0NAC domain-containing protein 89
SwissprotQ94F580.0NAC89_ARATH; NAC domain-containing protein 89
TrEMBLR0HBJ40.0R0HBJ4_9BRAS; Uncharacterized protein
STRINGCagra.0846s0004.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43092356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22290.10.0NAC domain containing protein 89
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]