PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0764s0003.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 297aa    MW: 33526.6 Da    PI: 7.6917
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0764s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.4e-06137156120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++C+ C k+F+r  nL+ H+
  Cagra.0764s0003.1.p 137 FSCHVCFKTFNRYNNLQMHM 156
                          89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.38E-5122159No hitNo description
PROSITE profilePS5015710.055137164IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.4E-4137156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
SuperFamilySSF576673.17E-5201241No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009813Biological Processflavonoid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MESSQQYEIS SSSSSEKPRN HSQPLDLFLN LNQNSCNNNT LVEPLPLLDR INLNSNPKPL  60
SGEEEQEDEE DDEVDVDLHI GLPGFGKSSS NDAKDPKKIY GKEIVTCDAG KDIENEVSGK  120
GYWIPAPEQI LIGFTHFSCH VCFKTFNRYN NLQMHMWGHG SQYRKGPESL KGTQPRAMLG  180
IPCYCCVEGC RNHIDHPRSK PLKDFRTLQT HYKRKHGHKP YSCRICGKLL AVKGDWRTHE  240
KNCGKRWVCV CGSDFKHKRS LKDHVKAFGQ GHGPYPSGLF EEQASNNSSV SETLFF*
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0764s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1902980.0AF190298.1 Arabidopsis thaliana ecotype Columbia transparent testa 1 (TT1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306363.10.0protein TRANSPARENT TESTA 1
SwissprotQ8VWG31e-179TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLR0GTY20.0R0GTY2_9BRAS; Uncharacterized protein
STRINGCagra.0764s0003.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-159C2H2 family protein
Publications ? help Back to Top
  1. Lian J, et al.
    Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus.
    Plant Sci., 2017. 254: p. 32-47
    [PMID:27964783]