PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0618s0003.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | C3H | ||||||||
Protein Properties | Length: 91aa MW: 10252.8 Da PI: 9.6237 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29 | 1.8e-09 | 58 | 81 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C++++r+G Ck G+rCk+ H+ Cagra.0618s0003.1.p 58 KAICPHYSRFGLCKSGPRCKYDHS 81 689********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0039 | 9 | 36 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.263 | 9 | 37 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-6 | 10 | 36 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.2E-5 | 14 | 35 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.72E-7 | 52 | 81 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.2E-4 | 55 | 82 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.558 | 55 | 83 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.8E-7 | 58 | 81 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-4 | 60 | 82 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MSDKNLPQRP DEPLCSYYQI TGNCNMKQNC QFHHPKNIKP IEPKLVLTDN GLPLRPNKAI 60 CPHYSRFGLC KSGPRCKYDH STRPSSSGPR * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0618s0003.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023644725.1 | 1e-60 | zinc finger CCCH domain-containing protein 13 | ||||
Swissprot | Q3ECU8 | 1e-37 | C3H13_ARATH; Zinc finger CCCH domain-containing protein 13 | ||||
TrEMBL | R0GT25 | 2e-57 | R0GT25_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0618s0003.1.p | 1e-60 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15633 | 9 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48195.1 | 5e-40 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0618s0003.1.p |