PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0542s0042.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 292aa    MW: 32376 Da    PI: 5.6775
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0542s0042.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.98e-051031223
                         EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                         +C+ C+ksFs+   L  H+++H
  Cagra.0542s0042.1.p 10 TCQVCKKSFSNGKALGGHMKSH 31
                         6*******************99 PP
2zf-C2H211.70.00077255277123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C++C+++F +   L  H ++H
  Cagra.0542s0042.1.p 255 YECQICNRVFESGQALGGHKKVH 277
                          99**********99999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.14931IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.577936IPR007087Zinc finger, C2H2
SuperFamilySSF576671.08E-71031No hitNo description
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PfamPF139121.5E-81132IPR007087Zinc finger, C2H2
SuperFamilySSF576671.08E-7208235No hitNo description
SMARTSM003550.15213235IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.367213240IPR007087Zinc finger, C2H2
PfamPF139122.6E-8213236IPR007087Zinc finger, C2H2
PROSITE patternPS000280215235IPR007087Zinc finger, C2H2
SuperFamilySSF576671.99E-5253278No hitNo description
PfamPF139128.3E-12254278IPR007087Zinc finger, C2H2
SMARTSM003550.028255277IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.408255277IPR007087Zinc finger, C2H2
PROSITE patternPS000280257277IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MYPLLNQEKT CQVCKKSFSN GKALGGHMKS HARQFSAELS TGSSLPSLRP RNNLGANFRR  60
PHETVLMRSA LTNEAASGRT PDLTKEGEQE VTAAKGKIFI DLEEEISTES LCGITSEQNA  120
LCLLQMKTMW SGQNPKSTKE GKDTEEYMEI DSEEDVEDSD DEYVAEEQED NEDGDVKFLT  180
SDVGYLTADS DEYADENAYY GTKERRGKKQ SKYMCDICGK VLRSHQALGG HRTSHRNKRL  240
KISGEDGSVV VGKRYECQIC NRVFESGQAL GGHKKVHYAF LSPINFSASA K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0542s0042.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006279551.10.0zinc finger protein ZAT9
TrEMBLR0G7H60.0R0G7H6_9BRAS; Uncharacterized protein
STRINGCagra.0542s0042.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141711523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61470.13e-86C2H2-like zinc finger protein