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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cagra.0114s0040.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
MYB |
| Protein Properties |
Length: 273aa MW: 30429.4 Da PI: 7.8418 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.0114s0040.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 59.6 | 6.9e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd+llvd+++++G g+W++ +r g+ R++k+c++rw +yl
Cagra.0114s0040.1.p 14 KGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYL 61
79********************************************97 PP
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| 2 | Myb_DNA-binding | 56.8 | 5.3e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg+++++Edel+++++ +lG++ W++Ia +++ gRt++++k++w+++
Cagra.0114s0040.1.p 67 RGNFSEDEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
89********************.*********.************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 273 aa
Download sequence Send
to blast |
MGRSPCCEKA HMNKGAWTKE EDQLLVDYIR KHGEGCWRSL PRAAGLQRCG KSCRLRWMNY 60
LRPDLKRGNF SEDEDELIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLSRG 120
IDPNTHRLIN DSAAASALVV LPPPPPLSLQ NDDVVEPLCI DLAGPVKPEP VLREEIGFNN 180
CTSSGTTSEK DFGNEGDWVL NLELSVGPAA TSYHRYESSR KASVVDSAES TRRWGSELFG 240
GAQSDAVCLC CRVGLFHNES CRNCRNSDVR TH*
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| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY072543 | 1e-179 | AY072543.1 Arabidopsis thaliana At1g22640/F12K8.1 mRNA, complete cds. |
| GenBank | BT000841 | 1e-179 | BT000841.1 Arabidopsis thaliana At1g22640/F12K8.1 mRNA, complete cds. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Zhou M, et al.
Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
Plant J., 2015. 84(2): p. 395-403
[PMID:26332741] - Wada T,Hayashi N,Tominaga-Wada R
Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis.
Plant Signal Behav, 2015. 10(11): p. e1089372
[PMID:26339713] - Wada T,Tominaga-Wada R
CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression.
Plant Sci., 2015. 241: p. 260-5
[PMID:26706076] - Song L, et al.
A transcription factor hierarchy defines an environmental stress response network.
Science, 2017.
[PMID:27811239] - Zhou M, et al.
LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
Plant Physiol., 2017. 174(3): p. 1348-1358
[PMID:28483877] - Mondal SK,Roy S
Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
[PMID:28490275]
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