PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG033008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 617aa MW: 67688.7 Da PI: 9.1986 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.3 | 5.9e-05 | 84 | 106 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H CCG033008.1 84 FICEVCHKGFQREQNLQLHRRGH 106 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.4 | 0.00047 | 160 | 182 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ CCG033008.1 160 WKCEKCSKKYAVQSDWKAHSKTC 182 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.74E-6 | 83 | 106 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.0E-5 | 83 | 106 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.679 | 84 | 106 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.016 | 84 | 106 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 86 | 106 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 170 | 125 | 155 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.8E-5 | 148 | 181 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.74E-6 | 155 | 180 | No hit | No description |
SMART | SM00355 | 140 | 160 | 180 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 617 aa Download sequence Send to blast |
MAASSSSAPF FGIREEEQNQ QMKQQHSSTP TSSSAQAPPP QKKKRNQPGT PSKYHQFYLK 60 IDLPDPDAEV IALSPMTLMA TNRFICEVCH KGFQREQNLQ LHRRGHNLPW KLKQKTTKEV 120 RRKVYLCPEL TCVHHEPSRA LGDLTGIKKH YSRKHGEKKW KCEKCSKKYA VQSDWKAHSK 180 TCGTREYRCD CGTLFSRRDS FITHRAFCDA LAQESARNPP TNLNTIGSHL YGSSNMTLGL 240 SQVGTQISSL QDHNNQSTDV LRLGGGGART GQFDHLLPSS IGSSSFRPPQ QMPSPAFFMQ 300 ETNQNYHDEN QSQQDLLQNK PFHHGLMQFA DIHNTTGNPP SAGNLFNLSF LSNSSTASSI 360 SNSNNANNSN SNLPTSGLLM PSHFNNQNGV DGGEGSNVFS NNVMGNQMTS GVPSLYSSSV 420 QNDNMASHMS ATALLQKAAQ MGSSSSNNSA SLLRSFGRDR PLVGGNFSGM FSENENNLHD 480 LMNSFAPGNS SMFGPGHAQE NPYGGYTASR TNLEQEKQHH GPNFGNSNMD EAKLHQSLNA 540 SIGGSDRLTR DFLGVGPQIV RSMSGSSGFS QREKQQQPQR QHHGMDMGGS SLDSERHNAN 600 ISAAPTSQSF GGNRSFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 9e-35 | 156 | 217 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 9e-35 | 156 | 217 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC208494 | 0.0 | AC208494.1 Populus trichocarpa clone JGIACSB265-L05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011021686.1 | 0.0 | PREDICTED: zinc finger protein NUTCRACKER-like | ||||
Refseq | XP_011021688.1 | 0.0 | PREDICTED: zinc finger protein NUTCRACKER-like | ||||
Refseq | XP_011021689.1 | 0.0 | PREDICTED: zinc finger protein NUTCRACKER-like | ||||
Swissprot | Q9ZUL3 | 1e-146 | IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | U5G1I0 | 0.0 | U5G1I0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s10950.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1536 | 33 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02070.1 | 1e-122 | indeterminate(ID)-domain 5 |
Publications ? help Back to Top | |||
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