PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG032808.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | G2-like | ||||||||
Protein Properties | Length: 487aa MW: 54110.9 Da PI: 8.6886 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.6 | 4.9e-32 | 299 | 352 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ CCG032808.1 299 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 352 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.05E-15 | 296 | 352 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-28 | 297 | 352 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-23 | 299 | 352 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.3E-7 | 300 | 351 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence Send to blast |
MPLEGFFIEP SSNPVPDLSL HISPPNISSP SSLCNKKNNN ISNKVDASFN LLGRQEAIHK 60 PNTVSSMRSD SQAYIELSLA HPTTGLDEES RRSRRNLSSS RAVELPQLNP YHQHSHNHQQ 120 QQQHLHHSNS TTHHLNHINH GVSLLEVSDG LRPIKGIPVY HNRSFPFTPL EHSSRENKDP 180 KMCFYQMPYP SSSFFSPVNP YSSCSTSSPY SIGGGGLDPM SMLNSSGPNQ ALPGPYNRLA 240 PTTRFNGLSM DAFKSHQLHH HHHHHHNQYG VGSTEGSPHG LIRSRFFPKL PTKRSMRAPR 300 MRWTSTLHAR FVHAVELLGG HERATPKSVL ELMDVKDLTL AHVKSHLQMY RTVKTTDKPA 360 SSSDGSGEED MSPIGSYGTA NERGGLQRGV QSDGSPVQQD MDYPSSTTTT TLWSNSSSGR 420 EAWPQTNSNE MDGHRQGTFQ SQQRSGQLME ESDSTRPKSY LGSSLACKNP SLEFTLGRPD 480 WPGKEHC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-16 | 300 | 354 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-16 | 300 | 354 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 5e-16 | 300 | 354 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-16 | 300 | 354 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-16 | 300 | 354 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-16 | 300 | 354 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-16 | 300 | 354 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-16 | 300 | 354 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-16 | 300 | 354 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-16 | 300 | 354 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-16 | 300 | 354 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-16 | 300 | 354 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC214214 | 0.0 | AC214214.1 Populus trichocarpa clone POP028-A01, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011043900.1 | 0.0 | PREDICTED: transcription repressor KAN1 | ||||
TrEMBL | A0A2K2ARM4 | 0.0 | A0A2K2ARM4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s02220.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1756 | 33 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16560.1 | 1e-71 | G2-like family protein |