PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG030754.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 382aa MW: 42597.7 Da PI: 8.1393 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.6 | 9.3e-05 | 146 | 169 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg+ F + +L++H+ t H CCG030754.1 146 FPCTACGEIFQKPQLLEQHQATkH 169 89******************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.598 | 146 | 174 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 148 | 169 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 9.21E-14 | 171 | 381 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 4.7E-4 | 173 | 286 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene3D | G3DSA:3.90.228.10 | 1.4E-4 | 316 | 381 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MAPNIGSVFN KFLSLFILLL HLGCFIFTTE LDDHHLNNPP PTKKRKKVSP LAPISSSPSR 60 LKSHKALSSS WSYLKSIFSS KSSKPQTQSG TPTLTSARSS QQSIVPTIPP ETHLPELPPR 120 KKSSGSCEES DISTDHHFFP LRNDIFPCTA CGEIFQKPQL LEQHQATKHA VTQLLDGDSG 180 KNIVHIIFKT GWSSKEKSPE IHRILKIHNS PKILSRFEEY REFVRAKAAR NSKRGDERCI 240 ADGNELLRFY CSTFMCDLGL NEDSSICNQQ YCSVCGIIKS GFSPKMDGIS TLSTSWRAHM 300 AIPEEIEEEF KFMNVKRAML VCRVVAGRVG CDLEEDVDKQ DGGSDSVLGR GGSGVHTRLD 360 EEELLVFNPR AVLPCFVIVY TV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 42 | 46 | KKRKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011032141.1 | 0.0 | PREDICTED: uncharacterized protein LOC105131066 | ||||
TrEMBL | A0A2K1Z2M6 | 0.0 | A0A2K1Z2M6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s04850.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10668 | 29 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29660.1 | 1e-114 | C2H2 family protein |