PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030062.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family G2-like
Protein Properties Length: 458aa    MW: 50597.1 Da    PI: 8.3357
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030062.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.84.5e-32267320255
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  CCG030062.1 267 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 320
                  9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-15264320IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-28265320IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-23267320IPR006447Myb domain, plants
PfamPF002498.5E-7268319IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MPLEGVFIEP SSNPVPDLSL HISPPNISSP SSICNNNSNI RDKIDASFNF LGRQEAIRKS  60
NTVGSMRSDS QACIELSLAH PTTGLNEESI RSRRNLSSAR VEELPHNNPY RQQSHHQQHL  120
HRSNGTTHHL NHINHGVSLL EVSDGLRPIK GIPVYHNRSF PFTPLEHSSR ENKDPKMCFY  180
QMPYPSSSLC SPSVNPHSSS STSSPYSIGG GAPTTRFNGL SMDAFKSHQL HHHHNQYGAG  240
STDGSPHGLI RSRFLPKLPT KRSMRAPRMR WTSTLHARFV HAVELLGGHE RATPKSVLEL  300
MDVKDLTLAH VKSHLQMYRT VKTTDKPAAS SDGSGEEDMA PIGSFRTANE QGGLQRVVQA  360
DGPTAQQDMD SPSTTTSAAT TLWSNSSSGR EAWPQTNASD FDGHRQGTFQ SQQRSGQQME  420
ECNSTQLKSY LVSSNMDCKN PSLEFTLGRP DWQGKEHC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-16268322458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-16268322458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-16268322357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-16268322357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-16268322357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-16268322357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-16268322458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-16268322458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-16268322458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-16268322458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-16268322458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-16268322458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2142140.0AC214214.1 Populus trichocarpa clone POP028-A01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011013379.10.0PREDICTED: transcription repressor KAN1-like
TrEMBLA0A2K1X7N10.0A0A2K1X7N1_POPTR; Uncharacterized protein
STRINGPOPTR_0017s02220.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17563391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.16e-70G2-like family protein