PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG029463.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 317aa    MW: 35658.8 Da    PI: 5.9028
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG029463.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-19122172155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  ++++GVr+++ +g+W+AeIrdp++    kr++lg+f taeeAa  +++a+  l+g
  CCG029463.1 122 KKFRGVRQRP-WGKWAAEIRDPTQ---GKRVWLGTFNTAEEAATVYDRAAVDLKG 172
                  59********.**********954...3*********************988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.51E-33122182No hitNo description
PfamPF008476.4E-12123168IPR001471AP2/ERF domain
PROSITE profilePS5103223.723123180IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-31123181IPR001471AP2/ERF domain
SMARTSM003802.1E-37123186IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-22123181IPR016177DNA-binding domain
PRINTSPR003671.9E-10124135IPR001471AP2/ERF domain
PRINTSPR003671.9E-10146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MSVQSKVKFT EDVFATKKLI KNHHHHQQQA HPSSRIRGQR LVRIIYTDPD ATDSSSDEGE  60
EQEQGRRFVR RVNRQVSEIR LLEQETTAPG APSSRTSNDD HRDPTRKRPS SRLPVSDVPR  120
RKKFRGVRQR PWGKWAAEIR DPTQGKRVWL GTFNTAEEAA TVYDRAAVDL KGPDAVTNFP  180
TQSFLTVKAN VDGPSEVQCE SCDSPSSSGV NAMPSPTSVL HYEEVTPFDP VLTEKAKVID  240
DHRESCESPL RLSMTSPTSV LRYEELTPFD SLAYGDVDAF GFKIDVPFGL PDLMLPGKFV  300
DKEEFVDLDD FLVEAIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-21122180463ATERF1
3gcc_A3e-21122180463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105122RKRPSSRLPVSDVPRRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011041777.10.0PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLB9INK50.0B9INK5_POPTR; Uncharacterized protein
STRINGPOPTR_0019s15190.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-37cytokinin response factor 4