PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG028666.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

WRKY

Protein Properties

Length: 353aa MW: 39993.9 Da PI: 10.228

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG028666.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.5	1.7e-30	286	343	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+W KYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYegeHnh+ CCG028666.1 286 DEYSWAKYGQKPIKGSPHPRGYYKCSSLrGCPARKHVERCLEDPSMLIVTYEGEHNHS 343 9***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	2.7E-17	237	281	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	2.7E-32	272	343	IPR003657	WRKY domain
PROSITE profile	PS50811	28.449	279	345	IPR003657	WRKY domain
SuperFamily	SSF118290	5.62E-26	282	343	IPR003657	WRKY domain
SMART	SM00774	2.3E-36	284	344	IPR003657	WRKY domain
Pfam	PF03106	4.6E-26	286	342	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MEEVEEVHKA AIESCNRVIG LLCQEKDQVQ GRNLMVETRE TVFKFKRFIS LLSTGLGHGR 60 VRKMKKLRPS LPQNIFLDSP NCNTILSPKP LQMVPPNFLE TPLTDIDAKS KPSIQISQKM 120 LLENPVLELN SNIRPPVQIM QTKPPQNFQL LQQHRQIQRM HFQQLQQMNY QADRVYSRSN 180 GGINLKFDGS TCTPTMSSTR SFMSSLSMDG AVSNFDGDSF HLIGMPHSSD HISQQTRRRC 240 SGRGEDGNAK CSSSGRCHCS KRRKLRVKRS IKVPAISNKV AHIPPDEYSW AKYGQKPIKG 300 SPHPRGYYKC SSLRGCPARK HVERCLEDPS MLIVTYEGEH NHSRLISSQS AHT

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MEEVEEVHKA AIESCNRVIG LLCQEKDQVQ GRNLMVETRE TVFKFKRFIS LLSTGLGHGR  60
VRKMKKLRPS LPQNIFLDSP NCNTILSPKP LQMVPPNFLE TPLTDIDAKS KPSIQISQKM  120
LLENPVLELN SNIRPPVQIM QTKPPQNFQL LQQHRQIQRM HFQQLQQMNY QADRVYSRSN  180
GGINLKFDGS TCTPTMSSTR SFMSSLSMDG AVSNFDGDSF HLIGMPHSSD HISQQTRRRC  240
SGRGEDGNAK CSSSGRCHCS KRRKLRVKRS IKVPAISNKV AHIPPDEYSW AKYGQKPIKG  300
SPHPRGYYKC SSLRGCPARK HVERCLEDPS MLIVTYEGEH NHSRLISSQS AHT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-18	286	342	16	71	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ377445	0.0	GQ377445.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 25 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011038553.1	0.0	PREDICTED: probable WRKY transcription factor 74
Swissprot	Q9SR07	1e-123	WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBL	A0A2K1Y0T8	0.0	A0A2K1Y0T8_POPTR; Uncharacterized protein
STRING	POPTR_0013s03990.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2637	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04670.1	1e-116	WRKY DNA-binding protein 39

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]