PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG028408.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 352aa    MW: 39034.5 Da    PI: 5.6116
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG028408.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.13.6e-28173233259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dg++WrKYGqKe+ gs+fpr+YYrCt++   +C +kk+v+r ++dp ++e+ Y+geH+++
  CCG028408.1 173 EDGFTWRKYGQKEILGSRFPRAYYRCTHQklyHCLAKKQVQRLDDDPYTFEVAYRGEHTCH 233
                  7****************************9999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-26167234IPR003657WRKY domain
SuperFamilySSF1182906.41E-25170234IPR003657WRKY domain
SMARTSM007745.6E-36172234IPR003657WRKY domain
PROSITE profilePS5081120.174173235IPR003657WRKY domain
PfamPF031066.5E-25173233IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MDETISLILH GCKLAKDLEL NLENLASQPE IFSKSCEDII RVFINARERL NVHQQDTASY  60
THHMLFREPQ ELQQQQNIDP SLQEWLRTSC PSAMETLFHQ SQVLGAEKTQ MGSGDFIIEL  120
GSRSDHVQAI DASDPGRGSS SSCQRPRRRK DDAERRTVRV PAQQFGNTEI PPEDGFTWRK  180
YGQKEILGSR FPRAYYRCTH QKLYHCLAKK QVQRLDDDPY TFEVAYRGEH TCHMSATAPS  240
VPPPATDIAQ EMAQNMSAPP QPSAATSLAR WLEFSLGSGG SAGCSSSSMA AGAGSGGEGP  300
STAGRYSKEA DYPIIDMADA MFNSGSSSTN SMEFIFPSIL EEKWDQASDK KP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-19173232968OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145149PRRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010147.10.0PREDICTED: WRKY transcription factor 55-like
TrEMBLA0A2K1Y3A00.0A0A2K1Y3A0_POPTR; Uncharacterized protein
STRINGPOPTR_0013s09460.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-53WRKY DNA-binding protein 55