PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG027809.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family G2-like
Protein Properties Length: 334aa    MW: 36673 Da    PI: 8.2928
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG027809.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1017.5e-32130183255
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  CCG027809.1 130 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 183
                  9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-28127184IPR009057Homeodomain-like
SuperFamilySSF466892.15E-15127184IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-23130183IPR006447Myb domain, plants
PfamPF002492.1E-7131182IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MMRAASPFPD LSLQISPPAV LEPKETGDDG GLARKALCRD RSSATDSDSS GSDLSHENGL  60
FNQDRIAYNL GPSQPTLSLG FDMADLSSPS FQLPRNLNHL HHHNPPQLYG GDFKRSARMI  120
SGVRRSKRAP RMRWTTTLHA HFVHAVQLLG GHERATPKSV LELMNVKDLT LAHVKSHLQM  180
YRTVKSTDKG SGQGQTNMGL NQRARILEVD AAGLSSEKAD ASNSSQSLNN PPPPSPLPSV  240
QKNQRNPGSL SMAIDEKNRP SLDSLTYSDF NAHDQSKEDG QKATLHMAAN MKERLDSSSL  300
SSSDMLINLE FTLGRPSWHL NYDESSNELT LLKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-17131185458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-17131185458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-17131185357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-17131185357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-17131185357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-17131185357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-17131185458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-17131185458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-17131185458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-17131185458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-17131185458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-17131185458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017262.10.0PREDICTED: probable transcription factor KAN4
TrEMBLA0A2K2BI440.0A0A2K2BI44_POPTR; Uncharacterized protein
STRINGcassava4.1_011255m1e-145(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44633358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.12e-64G2-like family protein