PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG027806.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 361aa MW: 41536 Da PI: 6.5842 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.9 | 7.6e-18 | 32 | 114 | 10 | 98 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++ + l +p kf +h +kk+ + ++l+ +sg +W v+l + ++++++++GW+eF k++ L+e+D ++Fk++++s+f v +f+ CCG027806.1 32 ASFGHHLPIPEKFS-NH-LKKKLPENVMLKGPSGGTWPVEL--TTDDDTMFFKNGWEEFLKDHFLEEKDLLIFKYNRESCF--EVVIFD 114 45556699*****7.44.45668899***************..99999****************************99***..776666 PP | |||||||
2 | B3 | 47.5 | 3.1e-15 | 262 | 346 | 1 | 87 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+ v++p +v ++ +v+p a++h e+k+++l+ + ++W+ k+ y+k++++ l++GW++F+ +n+L+e D+++F+ ++ CCG027806.1 262 FVVVMKPTHVYRKFYMVIPSGWANRHfrT---LEKKDVILRM-KENTWNTKFLYCKSKNSGGLSSGWRNFALDNKLQEFDVCLFEPSSA 346 7899**********************532...3345666655.889********99999999***********************6544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.49E-20 | 22 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.142 | 23 | 116 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-21 | 24 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.15E-18 | 25 | 114 | No hit | No description |
SMART | SM01019 | 4.8E-13 | 26 | 116 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.5E-15 | 33 | 114 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-19 | 256 | 359 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-17 | 258 | 359 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.29E-22 | 262 | 359 | No hit | No description |
PROSITE profile | PS50863 | 11.899 | 262 | 361 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.7E-14 | 262 | 346 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.8E-8 | 262 | 356 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MGEETCVDCR SKEEELYWTH FQCTHFSQIL DASFGHHLPI PEKFSNHLKK KLPENVMLKG 60 PSGGTWPVEL TTDDDTMFFK NGWEEFLKDH FLEEKDLLIF KYNRESCFEV VIFDGQSLCE 120 KAASYFVRKC GHRERDSVVH AKRKTVEDST EVSIACPQDS LGGTAEKSAN DYIYKTLVEN 180 TVISEAINKK TQREIKFSKP TQTKQSVRDE ESSSTDEATE TKPDVEHIAI NAPYVSSRRM 240 VTEEDKLNAL RLAQAAQSNE GFVVVMKPTH VYRKFYMVIP SGWANRHFRT LEKKDVILRM 300 KENTWNTKFL YCKSKNSGGL SSGWRNFALD NKLQEFDVCL FEPSSAVNNS IVFDVNIFRV 360 L |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00468 | DAP | Transfer from AT4G33280 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011017261.1 | 0.0 | PREDICTED: B3 domain-containing protein REM16-like | ||||
TrEMBL | A0A3N7EIL2 | 0.0 | A0A3N7EIL2_POPTR; Uncharacterized protein | ||||
STRING | cassava4.1_010400m | 1e-159 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4446 | 26 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 4e-78 | B3 family protein |