PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG027805.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 433aa    MW: 49447.4 Da    PI: 8.4673
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG027805.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.61.3e-1931110994
                  HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  +++  +rl +p  fa++  +k   + t+ l+ +sg  Wev l  + + ++ ++  GW+eFvk++ L+e+Df++Fk++g+s+f   v
  CCG027805.1  31 HSGFDQRLAIPEIFARHLRKK--LPDTVNLKGPSGAAWEVGL--TTYNNTLFFNHGWQEFVKDHALEENDFLIFKYNGESDF--DV 110
                  5667789********766644..888****************..999999***************************99998..44 PP
2B335.12.4e-11315395183
                  EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                  f+  ++p +v  +  + +p   + +h   +g+  +++ l++   + r W  ++ + k+++   lt+GWk+F+ +n+L e D++vF+
  CCG027805.1 315 FLILMKPTHVYGRFFVAIPSAWLVTHlpvKGN--QDVILRF---KDRAWHTRFFHHKSRNNGGLTAGWKKFALDNKLHEFDVCVFE 395
                  6667899999999999*******9**654333..4444444...5599999998888888888**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086315.3423116IPR003340B3 DNA binding domain
SuperFamilySSF1019365.69E-2024114IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.4E-1426116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-2230115IPR015300DNA-binding pseudobarrel domain
CDDcd100172.02E-1631114No hitNo description
PfamPF023621.4E-1631109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-15312412IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.123315414IPR003340B3 DNA binding domain
SMARTSM010191.9E-5315414IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-13315399IPR015300DNA-binding pseudobarrel domain
PfamPF023629.2E-10315395IPR003340B3 DNA binding domain
CDDcd100174.30E-17315412No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MGEETCKECR SWEEKIYWTH FQCVQFSQFL HSGFDQRLAI PEIFARHLRK KLPDTVNLKG  60
PSGAAWEVGL TTYNNTLFFN HGWQEFVKDH ALEENDFLIF KYNGESDFDV LMLDMQSMCE  120
KVAPYLVKKY ESAERGNGCR TKRKTVKSSV EVVHASPKGV VGGSQPEEFK DNDTDAIPVG  180
QPIVPRVTDK KICRGIKSIE ATEEDVVGGS QQEEFTYNGS DTIPTIPPLR QPIISPVGRK  240
KISREIKSIR RVQYWRVVKS RGPSTREEIE AEPDVQPLGQ PVDTVHHARK GRKVTEEEKR  300
NAMQLAARAV TEKGFLILMK PTHVYGRFFV AIPSAWLVTH LPVKGNQDVI LRFKDRAWHT  360
RFFHHKSRNN GGLTAGWKKF ALDNKLHEFD VCVFEPLDLV NYPIILNVSI FRVVEEASPI  420
TSQEDEKKSQ GHA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017257.10.0PREDICTED: B3 domain-containing protein REM16-like
RefseqXP_011017258.10.0PREDICTED: B3 domain-containing protein REM16-like
TrEMBLB9GNZ50.0B9GNZ5_POPTR; Uncharacterized protein
STRINGPOPTR_0002s13130.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-68B3 family protein