PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG027805.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 433aa MW: 49447.4 Da PI: 8.4673 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61.6 | 1.3e-19 | 31 | 110 | 9 | 94 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +++ +rl +p fa++ +k + t+ l+ +sg Wev l + + ++ ++ GW+eFvk++ L+e+Df++Fk++g+s+f v CCG027805.1 31 HSGFDQRLAIPEIFARHLRKK--LPDTVNLKGPSGAAWEVGL--TTYNNTLFFNHGWQEFVKDHALEENDFLIFKYNGESDF--DV 110 5667789********766644..888****************..999999***************************99998..44 PP | |||||||
2 | B3 | 35.1 | 2.4e-11 | 315 | 395 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+ ++p +v + + +p + +h +g+ +++ l++ + r W ++ + k+++ lt+GWk+F+ +n+L e D++vF+ CCG027805.1 315 FLILMKPTHVYGRFFVAIPSAWLVTHlpvKGN--QDVILRF---KDRAWHTRFFHHKSRNNGGLTAGWKKFALDNKLHEFDVCVFE 395 6667899999999999*******9**654333..4444444...5599999998888888888**********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 15.34 | 23 | 116 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.69E-20 | 24 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 4.4E-14 | 26 | 116 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.3E-22 | 30 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.02E-16 | 31 | 114 | No hit | No description |
Pfam | PF02362 | 1.4E-16 | 31 | 109 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-15 | 312 | 412 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.123 | 315 | 414 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-5 | 315 | 414 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.96E-13 | 315 | 399 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 9.2E-10 | 315 | 395 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.30E-17 | 315 | 412 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MGEETCKECR SWEEKIYWTH FQCVQFSQFL HSGFDQRLAI PEIFARHLRK KLPDTVNLKG 60 PSGAAWEVGL TTYNNTLFFN HGWQEFVKDH ALEENDFLIF KYNGESDFDV LMLDMQSMCE 120 KVAPYLVKKY ESAERGNGCR TKRKTVKSSV EVVHASPKGV VGGSQPEEFK DNDTDAIPVG 180 QPIVPRVTDK KICRGIKSIE ATEEDVVGGS QQEEFTYNGS DTIPTIPPLR QPIISPVGRK 240 KISREIKSIR RVQYWRVVKS RGPSTREEIE AEPDVQPLGQ PVDTVHHARK GRKVTEEEKR 300 NAMQLAARAV TEKGFLILMK PTHVYGRFFV AIPSAWLVTH LPVKGNQDVI LRFKDRAWHT 360 RFFHHKSRNN GGLTAGWKKF ALDNKLHEFD VCVFEPLDLV NYPIILNVSI FRVVEEASPI 420 TSQEDEKKSQ GHA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011017257.1 | 0.0 | PREDICTED: B3 domain-containing protein REM16-like | ||||
Refseq | XP_011017258.1 | 0.0 | PREDICTED: B3 domain-containing protein REM16-like | ||||
TrEMBL | B9GNZ5 | 0.0 | B9GNZ5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s13130.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4446 | 26 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 4e-68 | B3 family protein |