PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG027796.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 235aa    MW: 25996 Da    PI: 8.1267
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG027796.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85.1e-183782147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd +l  +v+++G+++W++I+r++  gR++k+c++rw + 
      CCG027796.1 37 KGPWSAEEDRILTGLVERHGPRNWSLISRYIK-GRSGKSCRLRWCNQ 82
                     79*****************************9.***********985 PP
2Myb_DNA-binding53.36.3e-1791133347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ 
      CCG027796.1  91 PFSPAEDEAILVAHARYGNR-WATIARLLP-GRTDNAVKNHWNST 133
                      79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.8573287IPR017930Myb domain
SuperFamilySSF466897.19E-3135130IPR009057Homeodomain-like
SMARTSM007176.4E-153685IPR001005SANT/Myb domain
PfamPF002495.5E-173782IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-243890IPR009057Homeodomain-like
CDDcd001678.27E-143981No hitNo description
SMARTSM007177.1E-1588136IPR001005SANT/Myb domain
PROSITE profilePS5129420.03689138IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2291137IPR009057Homeodomain-like
CDDcd001671.22E-1191134No hitNo description
PfamPF002493.4E-1491133IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
METMNMCSTS SSDSSASMSS FNGNKTPRST DKSARIKGPW SAEEDRILTG LVERHGPRNW  60
SLISRYIKGR SGKSCRLRWC NQLSPNVEHR PFSPAEDEAI LVAHARYGNR WATIARLLPG  120
RTDNAVKNHW NSTLKRRARQ RQSQMNLEGN SDSNYGNNNE CIDINMTSGS MADGMEREEE  180
DALTALTLAP PGIGGAVCGG NGGMVVESFP AGFWDVMRDV IAREVRECVS STQYM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-40361383105MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-393613857159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-393613857159MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-40361383105C-Myb DNA-Binding Domain
1msf_C5e-40361383105C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133139LKRRARQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017241.11e-176PREDICTED: transcriptional activator Myb-like
SwissprotO231601e-54MYB73_ARATH; Transcription factor MYB73
TrEMBLB9GNY71e-149B9GNY7_POPTR; Uncharacterized protein
STRINGPOPTR_0002s13030.11e-150(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50743256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.14e-57myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]