PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG027471.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bZIP

Protein Properties

Length: 372aa MW: 41653 Da PI: 7.4675

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG027471.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	39.1	1.7e-12	74	116	2	41
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 +++k +rr+++NReAAr+sR+RKka++++Le k ++Le+e CCG027471.1 74 PADKIQRRLAQNREAARKSRLRKKAYVQQLESsriKLAQLEQE 116 57999*************************9722244444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.5E-9	70	121	No hit	No description
SMART	SM00338	2.2E-6	73	133	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.1E-9	75	113	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.059	75	119	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.97E-7	77	118	No hit	No description
CDD	cd14708	4.36E-21	77	129	No hit	No description
PROSITE pattern	PS00036	0	80	95	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.7E-30	163	238	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MSSTSTQIAA LRGMGIYEPF NQISSWAHTF RDDGSLNIGP STIVQVDAGL DNKSEHVSHE 60 SMEPYRSDQE AHKPADKIQR RLAQNREAAR KSRLRKKAYV QQLESSRIKL AQLEQELERA 120 RHQGAYLGSA SNSSHLGFSG TVNPGIAAFE MEYGHWVEEQ LKQVSELRNA LQAHITDIEL 180 RILVENGLNH YNNLFRMKAD AAKADVFYLI SGKWRTPVER FFQWIGGFRP SELLNVLKSQ 240 LEPLTDQQLV DVTNLCQSSQ QAEDALTQGI DKLQEAMSQS IPADVMGAGG YGQMADVMGV 300 GGYGQMAGAM ENLRALEGFV TQADHLRQRT LQHMSRILTM RQSARGLLAL GEYFHRLRAL 360 SSLWAARPRE PT

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MSSTSTQIAA LRGMGIYEPF NQISSWAHTF RDDGSLNIGP STIVQVDAGL DNKSEHVSHE  60
SMEPYRSDQE AHKPADKIQR RLAQNREAAR KSRLRKKAYV QQLESSRIKL AQLEQELERA  120
RHQGAYLGSA SNSSHLGFSG TVNPGIAAFE MEYGHWVEEQ LKQVSELRNA LQAHITDIEL  180
RILVENGLNH YNNLFRMKAD AAKADVFYLI SGKWRTPVER FFQWIGGFRP SELLNVLKSQ  240
LEPLTDQQLV DVTNLCQSSQ QAEDALTQGI DKLQEAMSQS IPADVMGAGG YGQMADVMGV  300
GGYGQMAGAM ENLRALEGFV TQADHLRQRT LQHMSRILTM RQSARGLLAL GEYFHRLRAL  360
SSLWAARPRE PT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00247	DAP	Transfer from AT1G77920	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF145013	0.0	EF145013.1 Populus trichocarpa clone WS0111_I20 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011006864.1	0.0	PREDICTED: transcription factor TGA7-like isoform X1
Refseq	XP_011006865.1	0.0	PREDICTED: transcription factor TGA7-like isoform X1
Swissprot	Q93ZE2	1e-162	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A385ZA14	0.0	A0A385ZA14_9ROSI; BZIP1 (Fragment)
STRING	POPTR_0005s16400.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1096	34	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-164	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]