PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG026846.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 418aa MW: 46419.3 Da PI: 7.9114 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36 | 1.3e-11 | 352 | 397 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k + +++L +A +YIk+Lq CCG026846.1 352 SIAERVRRTRISERMRKLQDLVPNM----DKQTNTSDMLDLAADYIKDLQ 397 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.538 | 346 | 396 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.23E-16 | 349 | 410 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.43E-12 | 350 | 401 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.7E-14 | 351 | 405 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.2E-13 | 352 | 402 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-8 | 352 | 397 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MEHHHHFLHG HNEHQQIHQK QTNPGLTRYQ SAPSSYLSNI LDRDFCEEFL NRPASPETER 60 ILARFLASSS GNTENISSQN LCEIKQDSPE AVPQTNQQPQ MVAAMNNLGS DTRVQKQQQQ 120 QQSNYSASQG FYQNQAKPPL PDQKSGSGMN YRSMNSVGTE RLPSMKPSSS NNSNLVRHSS 180 SPAGLFSNIN SEFEFENGYA VLRGMRDLGA GNRDINYSAA SRPTPSSGRM GPVAEMGNKN 240 MGENSPESGG YSETRSSNYV SGYPIGSWDD SAMLSAGSKR HLTDDDTTVL SGLNASETQN 300 EEGGNRPPVL VHHMSLPKTA AEISAIEKFL QFQDSVPCRT RAKRGCATHP RSIAERVRRT 360 RISERMRKLQ DLVPNMDKQT NTSDMLDLAA DYIKDLQRQV QTLSEIRARC ACINKQQP |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00195 | DAP | Transfer from AT1G51140 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011037862.1 | 0.0 | PREDICTED: transcription factor bHLH122-like isoform X2 | ||||
TrEMBL | A0A3N7E6N3 | 0.0 | A0A3N7E6N3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s22290.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4185 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51140.1 | 1e-74 | bHLH family protein |