PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CCG026653.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 328aa MW: 37088.8 Da PI: 8.4805 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.1 | 4e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l+d+++++G g+W++ ++ g+ R++k+c++rw +yl CCG026653.1 14 KGAWTKEEDERLIDYIRLHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 57.3 | 3.7e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEde++++++ +lG++ W++Ia +++ gRt++++k++w+++ CCG026653.1 67 RGNFTEEEDEIIIKLHGLLGNK-WSLIAGKLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.715 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.58E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.75E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.902 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-28 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.65E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 328 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDERLIDYIR LHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDEIIIK LHGLLGNKWS LIAGKLPGRT DNEIKNYWNT HIKRKLISRG 120 IDPQTHRPLN EKTTTTTIAT STTKTTQLNF KNTPPQSLAE ISILKSQLDS KHNSTKSNDF 180 LSSLYSSFKP KKIEAASLEE NNCTSCSTTT DEEQQQKMES HHDQDINLDL TIGLAPTTKG 240 ESTHTSSNSA ESRLQQPVSS CQLFGSVSTR PVCLCWQSGG ATWESCRDCQ NHRYYCWKYS 300 PFSTSSPDPV IIKAIKEDDV KLPTYRGM |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-29 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00053 | PBM | Transfer from AT1G22640 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011004000.1 | 0.0 | PREDICTED: transcription repressor MYB6 | ||||
Swissprot | Q9S9K9 | 3e-94 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | B9IQH2 | 0.0 | B9IQH2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0019s11090.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G22640.1 | 4e-95 | myb domain protein 3 |