PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG026648.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 353aa MW: 41141.9 Da PI: 8.8713 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.6 | 5.6e-07 | 65 | 86 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++Cg sF+ + +L++H+++H CCG026648.1 65 TCEKCGASFKKPAYLVQHMQSH 86 6*******************99 PP | |||||||
2 | zf-C2H2 | 13.9 | 0.00016 | 92 | 116 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + C+ dC+ s++rk++L+rH+ H CCG026648.1 92 FMCSvdDCHASYRRKDHLTRHLLHH 116 789999***************9987 PP | |||||||
3 | zf-C2H2 | 18.6 | 5.1e-06 | 121 | 146 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kC+ +C+ F +snLkrH r H CCG026648.1 121 FKCEigNCDHKFVYPSNLKRHVRElH 146 89*********************988 PP | |||||||
4 | zf-C2H2 | 18.6 | 5e-06 | 161 | 185 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C+ Cgk F+ +s L++H +H CCG026648.1 161 YACQepGCGKAFRYPSKLRKHEDSH 185 789999***************9888 PP | |||||||
5 | zf-C2H2 | 13.4 | 0.00024 | 255 | 277 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ C +Fs+k nL++H + H CCG026648.1 255 HCKGCQHTFSTKTNLNQHVKAvH 277 588***************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.808 | 20 | 47 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 24 | 20 | 42 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.1E-6 | 64 | 85 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 13.069 | 64 | 91 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.007 | 64 | 86 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 66 | 86 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.64E-10 | 72 | 124 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.3E-11 | 86 | 116 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.515 | 92 | 121 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.17 | 92 | 116 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 94 | 116 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.6E-5 | 117 | 143 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.49E-8 | 119 | 185 | No hit | No description |
PROSITE profile | PS50157 | 12.092 | 121 | 151 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0024 | 121 | 146 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 123 | 146 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.8E-10 | 157 | 185 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.759 | 161 | 190 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.004 | 161 | 185 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 163 | 185 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 8.5 | 193 | 218 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 195 | 218 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 18 | 221 | 242 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 7.16E-7 | 234 | 289 | No hit | No description |
PROSITE profile | PS50157 | 11.884 | 252 | 282 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.079 | 252 | 277 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.0E-4 | 253 | 278 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 254 | 277 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 7.8E-5 | 279 | 305 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 5.7 | 283 | 309 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 285 | 309 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008097 | Molecular Function | 5S rRNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0080084 | Molecular Function | 5S rDNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MEEEAAEKGR AVIFRDIRRY YCDYCGICRS KKSLITSHVL THHKEEIEKE RVDGDEVKEG 60 VKSNTCEKCG ASFKKPAYLV QHMQSHSLER PFMCSVDDCH ASYRRKDHLT RHLLHHEGKL 120 FKCEIGNCDH KFVYPSNLKR HVRELHDESS PSDRVGGEKQ YACQEPGCGK AFRYPSKLRK 180 HEDSHVNLDS IEAMCIEPDC MKHFSNKKCL KAHVQFCHQY INCDICGTKQ LRKNIKRHLR 240 THEPVSGSTE RIKCHCKGCQ HTFSTKTNLN QHVKAVHLEQ RPFVCGFPGC DMRFSYKHVR 300 DNHEKSGLHV YTPGDFVESD QQFRSRPRGG RKRKFPTVEM LIRKRVTPPT EFD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2i13_A | 1e-14 | 52 | 242 | 10 | 184 | Aart |
2i13_B | 1e-14 | 52 | 242 | 10 | 184 | Aart |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 325 | 333 | RPRGGRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00229 | DAP | Transfer from AT1G72050 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011003995.1 | 0.0 | PREDICTED: transcription factor IIIA | ||||
Swissprot | Q84MZ4 | 1e-142 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | A0A2K1WRF6 | 0.0 | A0A2K1WRF6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0013s11300.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3069 | 33 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.2 | 1e-145 | transcription factor IIIA |