PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG026376.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 184aa MW: 19856.1 Da PI: 5.7355 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.8 | 3.2e-14 | 27 | 76 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++kG r++k +g+Wv+eIr p gk+ r +lg++ t+e Aa a++ a +l+g CCG026376.1 27 KFKGARRRK-WGKWVSEIRIP---GKQERLWLGSYSTPEAAAVAHDIASYCLRG 76 799999888.**********8...556*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.4E-23 | 26 | 86 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-26 | 27 | 92 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.364 | 27 | 86 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-16 | 27 | 87 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.71E-23 | 27 | 86 | No hit | No description |
Pfam | PF00847 | 1.1E-7 | 27 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-7 | 28 | 39 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-7 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MSGSSGSSGS SSRIIDQESG ASAAQRKFKG ARRRKWGKWV SEIRIPGKQE RLWLGSYSTP 60 EAAAVAHDIA SYCLRGPSSL ESLNFPLMLP ASVREDMSPK SIQKAASDAG MAIDAQMILN 120 RSLQNEVKDG PEKVAINHGP ETQLWEPAAG GGGDSNNLCE NWHENNIGTR VGDDLNISIE 180 DYLL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00158 | DAP | Transfer from AT1G22810 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF155951 | 0.0 | EF155951.1 Populus trichocarpa RAP2-like protein (RAP2L10) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011036246.1 | 1e-133 | PREDICTED: ethylene-responsive transcription factor ERF020 | ||||
TrEMBL | A0A2K1WR07 | 1e-119 | A0A2K1WR07_POPTR; Uncharacterized protein | ||||
TrEMBL | A9PLA0 | 1e-119 | A9PLA0_POPTR; RAP2-like protein | ||||
STRING | POPTR_0019s10220.1 | 1e-119 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5489 | 30 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22810.1 | 2e-45 | ERF family protein |