PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG026186.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

LBD

Protein Properties

Length: 295aa MW: 32797.9 Da PI: 7.0276

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG026186.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.3	1.1e-42	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC+++Cv+apyfp +qpkkfa vhk+FGasnv kll++l+ +reda++sl+yeAe r+rdPvyG+vg+i+ lqq+l+ql+++l ++k CCG026186.1 7 PCAACKFLRRKCTQECVFAPYFPPDQPKKFASVHKVFGASNVAKLLNELNAAQREDAVNSLAYEAEERLRDPVYGCVGLISILQQRLKQLQNDLYSAK 104 7*********************************************************************************************9998 PP DUF260 99 ee 100 +e CCG026186.1 105 KE 106 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.644	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-42	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPKKFASVH KVFGASNVAK LLNELNAAQR 60 EDAVNSLAYE AEERLRDPVY GCVGLISILQ QRLKQLQNDL YSAKKELVNY VEGQAMLPML 120 MQPQHLGNPS SSTVMQHNGM PMMGIPSVGQ MGMRADTHQH HHAHPQQIYE AQQLAAVVAA 180 REQEMIRVYE QQHQHHTQAQ RQHEIVRFNG GFDPANSVAA TGFNHVNPAA AMSPSLALGT 240 FDNSYQIQSQ GEPQPNQLQP ELLLQPQSQQ QQPQQLLQHP KSESEEGRST VGPSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-50	3	114	7	118	LOB family transfactor Ramosa2.1
5ly0_B	9e-50	3	114	7	118	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011009273.1	0.0	PREDICTED: LOB domain-containing protein 36-like
Refseq	XP_011009274.1	0.0	PREDICTED: LOB domain-containing protein 36-like
Refseq	XP_011009275.1	0.0	PREDICTED: LOB domain-containing protein 36-like
Refseq	XP_011009276.1	0.0	PREDICTED: LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	7e-87	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	B9H6D5	0.0	B9H6D5_POPTR; Uncharacterized protein
STRING	POPTR_0005s14150.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2353	34	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	8e-85	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]