PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG025919.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 297aa MW: 33653.5 Da PI: 8.8048 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00021 | 55 | 77 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H CCG025919.1 55 YSCSFCRREFRSAQALGGHMNVH 77 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.11E-6 | 52 | 81 | No hit | No description |
PROSITE profile | PS50157 | 11.219 | 55 | 82 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0098 | 55 | 77 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 57 | 77 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MEQARYWMLT KRKHSLNSNF QASTNPSFDD SWEEQAFAED AAGPLGGCIW PPRSYSCSFC 60 RREFRSAQAL GGHMNVHRRD RARLKQPPSP HNEVLQQEHQ SPHSHLQNPY KSFGFQHPSQ 120 LCNLVYSPNP NSDPGPIASP PSSSRVSTTP THENCRIKGF FPTFSSFIVE EQQKRSPRSS 180 PPPWTKLATE RCYHNSDLST EGGQNSWKVE SGCREKVNRI KTDLSVSLNL VVRRTRPSIT 240 DSEEDPSSCK KRRIDKSSLP FSLKSNSVDK SEVLEISPCT AEELDLELRL GDRPKVK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 1e-12 | 50 | 77 | 2 | 29 | superman protein |
2l1o_A | 1e-12 | 50 | 77 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209099 | 0.0 | AC209099.1 Populus trichocarpa clone POP015-B18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011006391.1 | 0.0 | PREDICTED: probable transcriptional regulator RABBIT EARS | ||||
TrEMBL | B9HBV3 | 0.0 | B9HBV3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s09040.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1776 | 30 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 2e-26 | zinc-finger protein 10 |